GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001393-TA|BGIBMGA001393-PA|undefined
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0310 + 16218439-16219383                                         32   1.8  
07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874     31   2.4  
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    31   2.4  
07_01_0083 - 629819-630260,631695-631838,632906-633186                 30   7.5  
05_03_0479 + 14529783-14530613                                         29   9.9  

>11_04_0310 + 16218439-16219383
          Length = 314

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 273 VPHLNDDKLYTALGSVLTLLNTSNNDDGYEETFKDYFK-INTCAYFHNLCNIDFSSK 328
           + +++D+    ++ + LT L++S NDDG++   KD+ K +   AY    C  DF+ +
Sbjct: 37  IQYISDEM--ASIHAFLTNLSSSGNDDGHDAQTKDWMKQVRDIAYDMEDCVDDFAHR 91


>07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874
          Length = 488

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 40  NKKWTTNEIGLLRAREYFQHAIPPQRILYRVDEHFVDNLLDYFKTGYSAIKREAGDPVTD 99
           +KKW +N+  LLR RE    A P  R  +  D +F+D    Y+     + +   GDP  D
Sbjct: 435 SKKWLSNQRRLLRLRE---KASPNARFEFSCDGYFMDY---YYNHSQRSHQLSVGDPFDD 488


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 529  EYDTKHKACCCSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCSNNKVSQSDVNTNIC 588
            E D++ + C    QVS + +LK+N V  C   P    +S   +    + V  S  N N+ 
Sbjct: 2235 EDDSQRRQCFNVVQVSKLQSLKSNVV--CGSHPELRRTSSFEMTLEESAV-DSITNNNVV 2291

Query: 589  STIESKNRTSKSTRFRXXXXXXXXXXXXXXLSNTKPYVEITIERPQNEI 637
            S + S   +  +  F                 ++KP   + + + + ++
Sbjct: 2292 SLVNSNVSSRDTNNFMADNSVAAAEMFRSRTKDSKPTKSVRLSQDEKKV 2340


>07_01_0083 - 629819-630260,631695-631838,632906-633186
          Length = 288

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 620 SNTKPYVEITIERPQNEISVGISTVTRNQGPNSHRPSKIPKRSVTAAG 667
           +N+K  V+  +ER  ++ SV I+T    +G +SH     P+ + TAAG
Sbjct: 148 TNSKCTVKKRVERSSDDPSVVITTY---EGQHSHHTVTFPRAAATAAG 192


>05_03_0479 + 14529783-14530613
          Length = 276

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 650 PNSHR-PSKIPKRSVTAAGEAKLTCKPPASP-EDRFQRKSFIP 690
           P  H  P K P  S  AA +A +    PA P EDR    SF P
Sbjct: 166 PRRHTTPDKTPSSSTAAAAKASVPDPTPAPPEEDRANDSSFNP 208


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,861,594
Number of Sequences: 37544
Number of extensions: 814105
Number of successful extensions: 1696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1695
Number of HSP's gapped (non-prelim): 6
length of query: 721
length of database: 14,793,348
effective HSP length: 87
effective length of query: 634
effective length of database: 11,527,020
effective search space: 7308130680
effective search space used: 7308130680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)