GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001393-TA|BGIBMGA001393-PA|undefined
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.087
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.81 
SB_35213| Best HMM Match : Gasdermin (HMM E-Value=4.3)                 33   1.1  
SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)           31   3.3  
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)                   31   3.3  
SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)                   30   5.7  
SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4)                     29   9.9  
SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)             29   9.9  

>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 36.3 bits (80), Expect = 0.087
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 9/83 (10%)

Query: 151 GTDGKSWSDPDPQLLNSIEVNIESPKHVFKTRSLDNPCESLAY----FIKTPV--GFVV- 203
           G   K+  +PD    + +   +E PKHVF++   D P +SL +    F+ +PV  G V+ 
Sbjct: 360 GKKRKAMDNPDTTTGDLLSSTVELPKHVFQSPKGDTPIKSLPFSPSQFLNSPVAGGKVIT 419

Query: 204 --PTPYVKWNDQGSTMFLPLKND 224
             P  + K     ST+  P K+D
Sbjct: 420 STPANHSKAEAGNSTLNTPSKSD 442


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 33.1 bits (72), Expect = 0.81
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 646 RNQGPNSHRPSKIPKRSVTAAGEAKLTCKPPASPEDRFQRKSFIPQPKKQAL 697
           RN    SH   K+   +  + GEA      P +PEDRF+ K  IP P+K+++
Sbjct: 338 RNPARTSHTRMKLGGGA--SKGEATRKPDGPPAPEDRFKGKRPIPTPRKRSV 387


>SB_35213| Best HMM Match : Gasdermin (HMM E-Value=4.3)
          Length = 442

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 494 SKSTPFEVEQSYSTNQGLEPSK-TVTLLNGGTVPGVEYDTKHKACCCSEQVSSID-TLKN 551
           S +T   +E S +T   LE S  T   L          +T +      E  ++   TL+N
Sbjct: 168 SNNTQATLETSNNTQATLETSNNTQATLETSNNTQATLETSNNTQATLETSNNTQATLEN 227

Query: 552 NNVGECTCQPCFDSSSKTPIDCSNNKVSQSDVNTNICSTIESKNRT 597
           NN  + T +    ++++  ++ SNN  +  + + N  +T+E+ N T
Sbjct: 228 NNDTQATLET--SNNTQATLETSNNTQATLETSNNTQATLETSNNT 271



 Score = 30.7 bits (66), Expect = 4.3
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 494 SKSTPFEVEQSYSTNQGLEPSK-TVTLLNGGTVPGVEYDTKHKACCCSEQVSSID-TLKN 551
           S +T   +E S +T   LE S  T   L          +T +      E  ++   TL+N
Sbjct: 98  SNNTQATLETSNNTQATLETSNNTQATLETSNNTQATLETSNNTQATLETSNNTQATLEN 157

Query: 552 NNVGECTCQPCFDSSSKTPIDCSNNKVSQSDVNTNICSTIESKNRT 597
           +N  + T +    ++++  ++ SNN  +  + + N  +T+E+ N T
Sbjct: 158 SNNTQATLET--SNNTQATLETSNNTQATLETSNNTQATLETSNNT 201



 Score = 29.5 bits (63), Expect = 9.9
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 494 SKSTPFEVEQSYSTNQGLEPSKTV--TLLNGGTVPGVEYDTKHKACCCSEQVSSIDTLKN 551
           S +T   +E S +T   LE S     TL N          + +         ++  TL+ 
Sbjct: 198 SNNTQATLETSNNTQATLETSNNTQATLENNNDTQATLETSNNTQATLETSNNTQATLET 257

Query: 552 NNVGECTCQPCFDSSSKTPIDCSNNKVSQSDVNTNICSTIESKNRT 597
           +N  + T +    ++++  ++ SNN  +  + + N  +T+E+ N T
Sbjct: 258 SNNTQATLET--SNNTQATLETSNNTQATLETSNNTQATLETSNNT 301


>SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)
          Length = 1084

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 83  KTGYSAIKREAGDPVTDKTMTVALSDVIGGYLKSWVLPVTKFAYYGGSISQENALNIFNF 142
           K     IK E G   ++   T + + +    L+S  L  TK A     I ++  LN   F
Sbjct: 692 KEQLDGIKSELGVAESEARETRSKASMTQQQLRS-ELETTKLALEESRIREKQLLN---F 747

Query: 143 YKEVKRYLGTDGKSWSDPDPQLLNSIEVNIES-PKHVFKTRSLDNPCESL 191
            + + R LG D  + S PD  +++ +E  +++   H   T SL+   + L
Sbjct: 748 RQVLARLLGLDVNNLSVPDYDIISRLERLVQAHHAHSITTHSLEGSLQDL 797


>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
          Length = 351

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 13/85 (15%)

Query: 509 QGLEPSKTVTLLNGGTVPG---VEYDTK--HKAC--C--CSEQVSSIDTLKNNNVGECTC 559
           +G+ PSK     NG   PG   V Y +K  H  C  C  C + + S   ++ +      C
Sbjct: 168 RGINPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFICDECKQPIGSKQFIRRDE--RRLC 225

Query: 560 QPCFDSS-SKTPIDCSNNKVSQSDV 583
             CFDS  +K  + C N  +  S V
Sbjct: 226 NNCFDSKFAKVCVKC-NQVIKTSSV 249


>SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)
          Length = 1043

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 489 YRKFYSKSTPFEVEQSYSTNQGLEPSKTVTLLN-GGTVPGVEYDTKHKA-CCCSE 541
           Y+ +YS S  +E   ++   QG + S+T T     G VPG  Y+ K +A   C E
Sbjct: 505 YKIYYSGSKSYEPSFNHQETQG-QVSRTATTREISGLVPGTRYEFKIRALTLCGE 558


>SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4)
          Length = 553

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 10/44 (22%), Positives = 24/44 (54%)

Query: 267 WLSDDIVPHLNDDKLYTALGSVLTLLNTSNNDDGYEETFKDYFK 310
           W +DD   + N DK+   + +++  +   N+ + Y+E + D ++
Sbjct: 509 WNNDDNTDYYNSDKMMLIMITIIMFMCDENDGNDYDEEYDDDYQ 552


>SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)
          Length = 340

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 329 KTIVICLIIFLEIVWCIPTLILLLCKKSK----NDDTCVDSSDSSKRR 372
           K ++  L+I   IV CI   +++L +K K    N D C D    SK++
Sbjct: 164 KAVIPALVIPTIIVICIAVAVIILLRKRKKSRLNMDNCHDKPSPSKKK 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,006,009
Number of Sequences: 59808
Number of extensions: 1031424
Number of successful extensions: 2344
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2313
Number of HSP's gapped (non-prelim): 35
length of query: 721
length of database: 16,821,457
effective HSP length: 87
effective length of query: 634
effective length of database: 11,618,161
effective search space: 7365914074
effective search space used: 7365914074
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)