SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001393-TA|BGIBMGA001393-PA|undefined
         (721 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)...    35   1.2  
U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain pro...    35   1.2  
AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (meros...    35   1.2  
AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (meros...    35   1.2  
AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (meros...    35   1.2  
AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (meros...    35   1.2  
AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (meros...    35   1.2  
AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (meros...    35   1.2  
AF217226-1|AAG09701.1|  521|Homo sapiens zinc finger protein ZNF...    34   1.5  
AB058777-1|BAB47503.2|  579|Homo sapiens KIAA1874 protein protein.     32   6.2  
U31520-1|AAC50302.1| 1144|Homo sapiens alpha mannosidase II prot...    32   8.2  
D63998-1|BAA10017.1| 1143|Homo sapiens golgi alpha-mannosidaseII...    32   8.2  
AC079145-3|AAX88936.1| 1170|Homo sapiens unknown protein.              32   8.2  
AB037757-1|BAA92574.2| 1219|Homo sapiens KIAA1336 protein protein.     32   8.2  

>Z26653-1|CAA81394.1| 3110|Homo sapiens laminin M chain (merosin)
            protein.
          Length = 3110

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 527  GVEYDTKHKACCCSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCS 574
            G    T  KAC CS  V S+D   N N G+C C P F  +  T  +CS
Sbjct: 1050 GHSITTGCKACNCST-VGSLDFQCNVNTGQCNCHPKFSGAKCT--ECS 1094


>U66796-1|AAB18388.1| 3110|Homo sapiens laminin alpha 2 chain protein.
          Length = 3110

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 527  GVEYDTKHKACCCSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCS 574
            G    T  KAC CS  V S+D   N N G+C C P F  +  T  +CS
Sbjct: 1050 GHSITTGCKACNCST-VGSLDFQCNVNTGQCNCHPKFSGAKCT--ECS 1094


>AL669984-2|CAI16682.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
            congenital muscular dystrophy) protein.
          Length = 3122

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 527  GVEYDTKHKACCCSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCS 574
            G    T  KAC CS  V S+D   N N G+C C P F  +  T  +CS
Sbjct: 1050 GHSITTGCKACNCST-VGSLDFQCNVNTGQCNCHPKFSGAKCT--ECS 1094


>AL590613-1|CAH70771.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
            congenital muscular dystrophy) protein.
          Length = 3122

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 527  GVEYDTKHKACCCSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCS 574
            G    T  KAC CS  V S+D   N N G+C C P F  +  T  +CS
Sbjct: 1050 GHSITTGCKACNCST-VGSLDFQCNVNTGQCNCHPKFSGAKCT--ECS 1094


>AL583853-1|CAH70492.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
            congenital muscular dystrophy) protein.
          Length = 3122

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 527  GVEYDTKHKACCCSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCS 574
            G    T  KAC CS  V S+D   N N G+C C P F  +  T  +CS
Sbjct: 1050 GHSITTGCKACNCST-VGSLDFQCNVNTGQCNCHPKFSGAKCT--ECS 1094


>AL513527-1|CAI15185.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
            congenital muscular dystrophy) protein.
          Length = 3122

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 527  GVEYDTKHKACCCSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCS 574
            G    T  KAC CS  V S+D   N N G+C C P F  +  T  +CS
Sbjct: 1050 GHSITTGCKACNCST-VGSLDFQCNVNTGQCNCHPKFSGAKCT--ECS 1094


>AL445439-1|CAH72952.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
            congenital muscular dystrophy) protein.
          Length = 3122

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 527  GVEYDTKHKACCCSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCS 574
            G    T  KAC CS  V S+D   N N G+C C P F  +  T  +CS
Sbjct: 1050 GHSITTGCKACNCST-VGSLDFQCNVNTGQCNCHPKFSGAKCT--ECS 1094


>AL356124-1|CAI22470.1| 3122|Homo sapiens laminin, alpha 2 (merosin,
            congenital muscular dystrophy) protein.
          Length = 3122

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 527  GVEYDTKHKACCCSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCS 574
            G    T  KAC CS  V S+D   N N G+C C P F  +  T  +CS
Sbjct: 1050 GHSITTGCKACNCST-VGSLDFQCNVNTGQCNCHPKFSGAKCT--ECS 1094


>AF217226-1|AAG09701.1|  521|Homo sapiens zinc finger protein ZNF286
           protein.
          Length = 521

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 481 RDIILPEIYRKFYSKSTPFEVEQSYSTNQGLEPSKTVTLLNGGTVPGVEYDTKHKACCCS 540
           RD++L E YR   S   P    +SY+   G EP K        +   +E   + K     
Sbjct: 67  RDVML-ENYRNLVSLWLPVSKPESYNLENGKEPLKLERKAPKSSYSDMETRPQSKDSTSV 125

Query: 541 EQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCSN 575
           +  S  ++ K   +   T    +DS+ +  ++C N
Sbjct: 126 QDFSKAESCKVAIIDRLTRNSVYDSNLEAALECEN 160


>AB058777-1|BAB47503.2|  579|Homo sapiens KIAA1874 protein protein.
          Length = 579

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 481 RDIILPEIYRKFYSKSTPFEVEQSYSTNQGLEPSKTVTLLNGGTVPGVEYDTKHKACCCS 540
           RD++L E YR   S   P    +S++   G EP K        +   +E   + K     
Sbjct: 125 RDVML-ENYRNLVSLWLPVSKPESHNLENGKEPLKLERKAPKSSYSDMETRPQSKDSTSV 183

Query: 541 EQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCSN 575
           +  S  ++ K   +   T    +DS+ +  ++C N
Sbjct: 184 QDFSKAESCKVAIIDRLTRNSVYDSNLEAALECEN 218


>U31520-1|AAC50302.1| 1144|Homo sapiens alpha mannosidase II
           protein.
          Length = 1144

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 295 SNNDDGYEETFKDYFKINTCAYFHNL-CNIDFSSKKTIVICLIIFLEIVWCI 345
           S+ND G+ +TF DYF+  T   F+N+   +   S++  +   I +L   W I
Sbjct: 174 SHNDPGWLKTFNDYFRDKTQYIFNNMVLKLKEDSRRKFIWSEISYLSKWWDI 225


>D63998-1|BAA10017.1| 1143|Homo sapiens golgi alpha-mannosidaseII
           protein.
          Length = 1143

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 295 SNNDDGYEETFKDYFKINTCAYFHNL-CNIDFSSKKTIVICLIIFLEIVWCI 345
           S+ND G+ +TF DYF+  T   F+N+   +   S++  +   I +L   W I
Sbjct: 174 SHNDPGWLKTFNDYFRDKTQYIFNNMVLKLKEDSRRKFIWSEISYLSKWWDI 225


>AC079145-3|AAX88936.1| 1170|Homo sapiens unknown protein.
          Length = 1170

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 397  TASRVQINTSDYEGLFIAEDVHNVGTMCSSVSRNSVGTCTQSFFSSK 443
            TA +  ++  DYE +    +++++  +C+  SR + GTC+++F   K
Sbjct: 1036 TALKTALHLKDYEDIIPPVEIYSLLALCACASR-AFGTCSKAFIKLK 1081


>AB037757-1|BAA92574.2| 1219|Homo sapiens KIAA1336 protein protein.
          Length = 1219

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 397  TASRVQINTSDYEGLFIAEDVHNVGTMCSSVSRNSVGTCTQSFFSSK 443
            TA +  ++  DYE +    +++++  +C+  SR + GTC+++F   K
Sbjct: 1085 TALKTALHLKDYEDIIPPVEIYSLLALCACASR-AFGTCSKAFIKLK 1130


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,572,703
Number of Sequences: 224733
Number of extensions: 4170128
Number of successful extensions: 8538
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8537
Number of HSP's gapped (non-prelim): 14
length of query: 721
length of database: 73,234,838
effective HSP length: 95
effective length of query: 626
effective length of database: 51,885,203
effective search space: 32480137078
effective search space used: 32480137078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 69 (31.9 bits)

- SilkBase 1999-2023 -