GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001393-TA|BGIBMGA001393-PA|undefined
         (721 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.      33   0.53 
AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle defec...    33   0.53 
AF043704-3|AAK21473.2|  823|Caenorhabditis elegans Sulfate perme...    32   1.2  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    31   2.2  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    31   2.2  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    31   2.2  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      31   2.2  
CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical ...    30   6.6  
AF043695-17|AAB97549.1|  544|Caenorhabditis elegans Hypothetical...    30   6.6  
AC084158-28|AAL27265.2|  322|Caenorhabditis elegans Hypothetical...    29   8.7  
AB275890-1|BAF34313.1|  322|Caenorhabditis elegans D-amino acid ...    29   8.7  

>AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.
          Length = 529

 Score = 33.5 bits (73), Expect = 0.53
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 12/79 (15%)

Query: 118 VLPVTKFAYYGGSISQENALNIFNFYKEVKRYLGTDGKSWSDP----------DPQLLNS 167
           + PV  F  Y  S S+   L + + Y +++R L TD   W             D  L N 
Sbjct: 153 LFPVKAFEKYSASCSEMEEL-LKHRYHQIER-LQTDISQWKSMAQNVADYIGGDDDLKNL 210

Query: 168 IEVNIESPKHVFKTRSLDN 186
           +E NI+SP+ VF  R LD+
Sbjct: 211 LEKNIDSPEFVFSERLLDS 229


>AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle
           defective protein 1 protein.
          Length = 529

 Score = 33.5 bits (73), Expect = 0.53
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 12/79 (15%)

Query: 118 VLPVTKFAYYGGSISQENALNIFNFYKEVKRYLGTDGKSWSDP----------DPQLLNS 167
           + PV  F  Y  S S+   L + + Y +++R L TD   W             D  L N 
Sbjct: 153 LFPVKAFEKYSASCSEMEEL-LKHRYHQIER-LQTDISQWKSMAQNVADYIGGDDDLKNL 210

Query: 168 IEVNIESPKHVFKTRSLDN 186
           +E NI+SP+ VF  R LD+
Sbjct: 211 LEKNIDSPEFVFSERLLDS 229


>AF043704-3|AAK21473.2|  823|Caenorhabditis elegans Sulfate permease
           family protein 6 protein.
          Length = 823

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 267 WLSDDIVPHLNDDKLYTALGSVLTLLNTSNNDDGYEETFKDYFKINTCAYFHNLCNIDFS 326
           WLSD +V  L        L S L  +   +N     E F++   +    +F  + ++D++
Sbjct: 227 WLSDQLVQGLISGAAVHVLTSQLKSMTRISNVPPTSEPFQNV--VFYMCFFKQMPDVDYA 284

Query: 327 SKKTIVICLIIFLEIVWCIPTLIL--LLCKK 355
           S    VIC+++ L     I TL++   LCKK
Sbjct: 285 SIIISVICVVLLL-----ISTLVIDPWLCKK 310


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 539 CSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCSNNKVSQSDVNTNICSTIESKNRTS 598
           C      ++   +   GECTCQP F   S     CS  K  +S   +  CS      +T 
Sbjct: 557 CKLHCKCVNGKCDKETGECTCQPGF-FGSDCSTTCSKGKYGESCELSCPCSDASCSKQTG 615

Query: 599 K 599
           K
Sbjct: 616 K 616


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 539 CSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCSNNKVSQSDVNTNICSTIESKNRTS 598
           C      ++   +   GECTCQP F   S     CS  K  +S   +  CS      +T 
Sbjct: 557 CKLHCKCVNGKCDKETGECTCQPGF-FGSDCSTTCSKGKYGESCELSCPCSDASCSKQTG 615

Query: 599 K 599
           K
Sbjct: 616 K 616


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 539 CSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCSNNKVSQSDVNTNICSTIESKNRTS 598
           C      ++   +   GECTCQP F   S     CS  K  +S   +  CS      +T 
Sbjct: 557 CKLHCKCVNGKCDKETGECTCQPGF-FGSDCSTTCSKGKYGESCELSCPCSDASCSKQTG 615

Query: 599 K 599
           K
Sbjct: 616 K 616


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 539 CSEQVSSIDTLKNNNVGECTCQPCFDSSSKTPIDCSNNKVSQSDVNTNICSTIESKNRTS 598
           C      ++   +   GECTCQP F   S     CS  K  +S   +  CS      +T 
Sbjct: 557 CKLHCKCVNGKCDKETGECTCQPGF-FGSDCSTTCSKGKYGESCELSCPCSDASCSKQTG 615

Query: 599 K 599
           K
Sbjct: 616 K 616


>CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical
           protein C42C1.8 protein.
          Length = 544

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 646 RNQGPNSHRPSKIPKRSVTAAGEAKLTCKPPASPEDRFQRKSFIPQPKKQALVVADDIVL 705
           +NQ PN  +P    K+S     ++K T +     +    ++  +P P K+   +  D+V 
Sbjct: 11  KNQNPNKSKPDPKEKKSSKKGKKSKNTEEQEDKTKTEETQEEIVPDPLKEDAKILPDLVS 70

Query: 706 KN 707
           ++
Sbjct: 71  RS 72


>AF043695-17|AAB97549.1|  544|Caenorhabditis elegans Hypothetical
           protein C42C1.8 protein.
          Length = 544

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 646 RNQGPNSHRPSKIPKRSVTAAGEAKLTCKPPASPEDRFQRKSFIPQPKKQALVVADDIVL 705
           +NQ PN  +P    K+S     ++K T +     +    ++  +P P K+   +  D+V 
Sbjct: 11  KNQNPNKSKPDPKEKKSSKKGKKSKNTEEQEDKTKTEETQEEIVPDPLKEDAKILPDLVS 70

Query: 706 KN 707
           ++
Sbjct: 71  RS 72


>AC084158-28|AAL27265.2|  322|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.5 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 201 FVVPTPYVKWNDQGSTMFLPLKNDXXXXXXXXXXXXXXFKYYDVAKNCIETSGQ---GDQ 257
           ++ PTPY+KW    +  F  LKN                + YDV  NC     +   GD+
Sbjct: 134 YLEPTPYIKW---CTDKF--LKNGGKFKKQKIENIDDVARSYDVTVNCTGLGSRALIGDK 188

Query: 258 DNFDERFQTW-LSDDIVPH-LNDDKLYTALG-SVLTLLNT 294
           + +  R Q   +S   V H   DDK Y  L  S +TL  T
Sbjct: 189 EVYPTRGQILKVSCPRVKHFFIDDKYYALLNDSTITLGGT 228


>AB275890-1|BAF34313.1|  322|Caenorhabditis elegans D-amino acid
           oxidase protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 201 FVVPTPYVKWNDQGSTMFLPLKNDXXXXXXXXXXXXXXFKYYDVAKNCIETSGQ---GDQ 257
           ++ PTPY+KW    +  F  LKN                + YDV  NC     +   GD+
Sbjct: 134 YLEPTPYIKW---CTDKF--LKNGGKFKKQKIENIDDVARSYDVTVNCTGLGSRALIGDK 188

Query: 258 DNFDERFQTW-LSDDIVPH-LNDDKLYTALG-SVLTLLNT 294
           + +  R Q   +S   V H   DDK Y  L  S +TL  T
Sbjct: 189 EVYPTRGQILKVSCPRVKHFFIDDKYYALLNDSTITLGGT 228


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,908,485
Number of Sequences: 27539
Number of extensions: 781337
Number of successful extensions: 2080
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2078
Number of HSP's gapped (non-prelim): 11
length of query: 721
length of database: 12,573,161
effective HSP length: 87
effective length of query: 634
effective length of database: 10,177,268
effective search space: 6452387912
effective search space used: 6452387912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)