GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001392-TA|BGIBMGA001392-PA|IPR008946|Nuclear receptor,
ligand-binding, IPR000536|Nuclear hormone receptor, ligand-binding
         (177 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    72   3e-15
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    52   4e-09
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.066
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    21   4.3  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    21   4.3  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    21   4.3  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 71.7 bits (168), Expect = 3e-15
 Identities = 33/66 (50%), Positives = 44/66 (66%)

Query: 16  ILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQV 75
           I+  N D  G+  V  +E L+EK    LEEY RT +PN+P RF KLLLRLP+LR++  + 
Sbjct: 319 IILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKC 378

Query: 76  IEQLFF 81
           +E LFF
Sbjct: 379 LEHLFF 384


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 51.6 bits (118), Expect = 4e-09
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 32  IESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPS-LRTVSSQVIEQLFFRYQREAQPE 90
           I  +Q+ +Q  L ++  T YP QP RFGK+LL + S  RT+S + IE LFF+      P 
Sbjct: 329 ISVIQDDAQMRLNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRTIEDLFFKKVIRDTPI 388

Query: 91  DAVTSS 96
            A+ S+
Sbjct: 389 VAIISN 394


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 0.066
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 32  IESLQEKSQCALEEYCRTQYPNQP-TRFGKLLLRLPSLRTVSSQVIEQLF 80
           +E +QE    AL  Y   +   +P T F KLL  L  LRT+ +Q  E  F
Sbjct: 477 VEKIQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLTELRTLGNQNSEMCF 526


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 98  EFQEAAETDYFARGRSSERA 117
           E++E   T  FARGRS   A
Sbjct: 36  EYREDIRTAKFARGRSINMA 55


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 98  EFQEAAETDYFARGRSSERA 117
           E++E   T  FARGRS   A
Sbjct: 36  EYREDIRTAKFARGRSINMA 55


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 98  EFQEAAETDYFARGRSSERA 117
           E++E   T  FARGRS   A
Sbjct: 36  EYREDIRTAKFARGRSINMA 55


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,904
Number of Sequences: 317
Number of extensions: 1239
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 177
length of database: 114,650
effective HSP length: 53
effective length of query: 124
effective length of database: 97,849
effective search space: 12133276
effective search space used: 12133276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)