GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001392-TA|BGIBMGA001392-PA|IPR008946|Nuclear receptor,
ligand-binding, IPR000536|Nuclear hormone receptor, ligand-binding
         (177 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    27   1.6  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.1  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   3.7  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    25   8.5  

>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 22  DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTV 71
           D  G+ +V H E +   S+ A + Y R  Y N     GK+ +    +RT+
Sbjct: 102 DGTGMIEVRHWEHIDALSELATDTYVRV-YGNIKIFSGKIYIASQYIRTI 150


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 25  GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFRYQ 84
           G S +TH    Q+K+  A+E         QP RF   L   P+  T+  +  E+L  RY 
Sbjct: 426 GTSSLTHF---QDKTT-AIEHSINKSNSKQPPRFKFQLPPRPTSNTLPLEPEEELVTRYS 481

Query: 85  REAQ---PEDAVTSSSEFQEAAETDYF 108
             +     ++A+T  S+  +   ++ F
Sbjct: 482 VSSDGNTVDEAITKQSQTFQLVNSNEF 508


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 82  RYQREAQPEDAVTSSSEFQEAAETDYFARGRSSERADPCPTFDPLSAF 129
           R +RE   +++       +EA    +FA  ++ E +D C T   L  F
Sbjct: 718 RRRRELLEKESEEKERRLREAKIAAFFAPNQTKEGSDGCTTSSQLGLF 765


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 104 ETDYFARGRSSERADPCPTFDPLSAFYAPKTTEECFEVATSTIETQKQVHKSLTI 158
           ++ Y A    ++   PC    PL +  A K     F  A   ++ Q+Q+   L +
Sbjct: 18  KSGYLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGV 72


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,868
Number of Sequences: 5004
Number of extensions: 27301
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 4
length of query: 177
length of database: 2,362,478
effective HSP length: 68
effective length of query: 109
effective length of database: 2,022,206
effective search space: 220420454
effective search space used: 220420454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)