Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001392-TA|BGIBMGA001392-PA|IPR008946|Nuclear receptor,
ligand-binding, IPR000536|Nuclear hormone receptor, ligand-binding
(177 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 2e-25
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 87 1e-17
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 79 2e-15
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 2e-14
SB_53365| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 6e-14
SB_56035| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 4e-13
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0) 62 2e-10
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 60 8e-10
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 56 1e-08
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 50 8e-07
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 47 8e-06
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_37515| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_34958| Best HMM Match : PkinA_anch (HMM E-Value=4.5) 28 5.0
SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22) 27 8.7
SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079) 27 8.7
SB_47249| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 112 bits (269), Expect = 2e-25
Identities = 57/81 (70%), Positives = 65/81 (80%), Gaps = 4/81 (4%)
Query: 5 RNLHVGKAE--C--QILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGK 60
RNLHV AE C I+ +DA GL+D +IESLQEK+QCALEEY R QYPNQPTRFGK
Sbjct: 470 RNLHVDAAEFACLKAIVLFTSDASGLTDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGK 529
Query: 61 LLLRLPSLRTVSSQVIEQLFF 81
LLLRLPSLR++SS V+EQLFF
Sbjct: 530 LLLRLPSLRSISSSVVEQLFF 550
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 86.6 bits (205), Expect = 1e-17
Identities = 43/81 (53%), Positives = 58/81 (71%), Gaps = 4/81 (4%)
Query: 5 RNLHVGKAE--C--QILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGK 60
+N+H+ AE C I+ N D+ GLS+ +E+LQ+++Q ALE+Y RTQYPNQ TRFGK
Sbjct: 309 KNMHIDSAEFACLKAIVLFNPDSQGLSEPAQVENLQDRTQSALEDYIRTQYPNQTTRFGK 368
Query: 61 LLLRLPSLRTVSSQVIEQLFF 81
LLLRLP+LR + +E LFF
Sbjct: 369 LLLRLPALRLLRPVSVENLFF 389
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 79.0 bits (186), Expect = 2e-15
Identities = 42/81 (51%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 1 MKISRNLHVGKAECQILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGK 60
M ++ + H+ +C +L R AD ++ +E LQ+ SQ +LE+Y R+QYP+QPTRFGK
Sbjct: 280 MDMTEHFHL---KCIVLFR-ADGSLINQPRQVEVLQDTSQSSLEQYIRSQYPSQPTRFGK 335
Query: 61 LLLRLPSLRTVSSQVIEQLFF 81
LLL L SLR V S VIEQLFF
Sbjct: 336 LLLMLSSLRKVESTVIEQLFF 356
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 75.4 bits (177), Expect = 2e-14
Identities = 36/61 (59%), Positives = 45/61 (73%)
Query: 22 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 81
D GL +E LQ+++Q L EYCR+QYP+Q RFGKLLL LPSL+TVS ++IE LFF
Sbjct: 341 DLRGLRAPQLVERLQDQAQSMLGEYCRSQYPDQQVRFGKLLLMLPSLKTVSPKMIEDLFF 400
Query: 82 R 82
R
Sbjct: 401 R 401
>SB_53365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 74.1 bits (174), Expect = 6e-14
Identities = 35/50 (70%), Positives = 41/50 (82%)
Query: 32 IESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 81
+E LQ+ SQ +LE+Y R+QYP+QPTRFGKLLL L SLR V S VIEQLFF
Sbjct: 11 VEVLQDTSQSSLEQYIRSQYPSQPTRFGKLLLMLSSLRKVESTVIEQLFF 60
>SB_56035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 71.3 bits (167), Expect = 4e-13
Identities = 33/60 (55%), Positives = 43/60 (71%)
Query: 23 ACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFR 82
ACGL D IE+ Q+++Q L EY R+ YP Q RFG+LLL LP+LR VS+ IE+LFF+
Sbjct: 2 ACGLKDPEQIETTQDQAQLMLGEYIRSTYPTQVARFGRLLLLLPALRRVSALAIEELFFK 61
>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 7 LHVGKAECQILAR----NADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLL 62
L + +AE +L N D L+D I+++Q K+Q ALEEY R YP P RFG++L
Sbjct: 261 LQLSRAEFSLLKALALFNPDTEQLADAVQIQAVQNKTQNALEEYIRVHYPQTPNRFGQVL 320
Query: 63 LRLPSLRTVSSQVIEQLFF 81
LRL +L V ++IE +FF
Sbjct: 321 LRLTALGAVECKIIEHVFF 339
>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 553
Score = 62.1 bits (144), Expect = 2e-10
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 16 ILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQV 75
I+ N D GL + IE LQ+K AL+E+ +P +P RFG +LLRLP LR++ ++
Sbjct: 466 IILLNPDLPGLQNQQLIEQLQDKVHSALQEHINLAFPREPNRFGNILLRLPELRSIGTKS 525
Query: 76 IEQLF 80
+E+LF
Sbjct: 526 LERLF 530
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 60.5 bits (140), Expect = 8e-10
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 22 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 81
D L D +E Q+++Q L +Y + Q+ Q RFGKLLL LPSLR V ++ IE+LFF
Sbjct: 232 DLRDLRDPQQVECYQDQAQIMLGDYIKRQFAGQQVRFGKLLLMLPSLRLVRNKTIEELFF 291
Query: 82 R 82
R
Sbjct: 292 R 292
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 56.4 bits (130), Expect = 1e-08
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 16 ILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQV 75
I+ + DA V ESLQE AL+ +CR ++P +P+R+GK+LL+L SL++V ++
Sbjct: 248 IILFSPDASEGPFVQEFESLQELVLSALDRFCRARFPEEPSRYGKVLLKLMSLKSVIAED 307
Query: 76 IEQLFF 81
IE L F
Sbjct: 308 IETLVF 313
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 50.4 bits (115), Expect = 8e-07
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 25 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFR 82
GL D ++ +Q+ Q L + T++P P+RFGKLLL + L +++ + IE++ FR
Sbjct: 329 GLKDSDQVDKIQDHIQLLLAHHTMTKHPTHPSRFGKLLLSISPLHSLAEKPIEEVLFR 386
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 47.2 bits (107), Expect = 8e-06
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 16 ILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQV 75
IL + + GL + +E L+ L+ + T YP+QP R K+LLRLP+LR V ++
Sbjct: 269 ILLADPENPGLLEKPKVEELRTSFLSGLKLHVETVYPSQPERLAKILLRLPALRDVCTKA 328
Query: 76 IEQLFFRYQREAQPEDAVTSSSEFQEAAE 104
E +F R A+ E V S+ QE E
Sbjct: 329 YE--YFVLVR-AKLEGEVPMSTLLQEMFE 354
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 28 DVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 81
++ I LQE +L+ Y + P + TRF LLLRLP+ R ++ +V+E++FF
Sbjct: 951 NIKQITDLQETISESLQVYLSKRQPPETTRFASLLLRLPAARMLTHEVLEEVFF 1004
>SB_37515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/57 (31%), Positives = 38/57 (66%)
Query: 25 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 81
GL + ++ + ++ AL +Y ++ YP +P+RF +LL+LP+LR +++++ E+ F
Sbjct: 5 GLRNRDLVDFVLNRTLDALRDYIKSSYPEKPSRFAHILLKLPTLRDMATRMAEECLF 61
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/57 (31%), Positives = 38/57 (66%)
Query: 25 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 81
GL + ++ + ++ AL +Y ++ YP +P+RF +LL+LP+LR +++++ E+ F
Sbjct: 280 GLRNRDLVDFVLNRTLDALRDYIKSSYPEKPSRFAHILLKLPTLRDMATRMAEECLF 336
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 32.7 bits (71), Expect = 0.17
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 15 QILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQ 74
Q + N DAC V ++S + ++ C + Q RFG LL+RLP L V +
Sbjct: 935 QAIQDNFDACAEILVQRLQSYKTQAD-EYHNSCIQELRGQLQRFGVLLVRLPVL--VMNV 991
Query: 75 VIEQLFFRYQREAQPED 91
V+E+ R+ + +D
Sbjct: 992 VVEEHVTELNRQREEKD 1008
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 27 SDVTHIESLQEKSQCALEEYCRT 49
S+VTH+E + +C YCRT
Sbjct: 542 SNVTHLERADQCEKCGYGHYCRT 564
>SB_34958| Best HMM Match : PkinA_anch (HMM E-Value=4.5)
Length = 342
Score = 27.9 bits (59), Expect = 5.0
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 26 LSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFRYQR 85
+SD+TH++ L C L Y R + N + KLLL+ V + Y+R
Sbjct: 54 VSDITHLKYLGYDRACGLVPYLRNKAKN-GSAGAKLLLQQVKFLVDIFHVSDHKESVYRR 112
Query: 86 EAQPEDAVTSSSE 98
A A+ +SS+
Sbjct: 113 PAMERCALRTSSK 125
>SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22)
Length = 775
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 22 DACGLSDVTHIESL--QEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLR 69
D +S TH+ S Q KS EY Y N TR LL + P R
Sbjct: 208 DEFSISIYTHLTSTTAQNKSHKDTPEYPTGSYTNHRTRIQDLLAKCPKKR 257
>SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079)
Length = 605
Score = 27.1 bits (57), Expect = 8.7
Identities = 24/133 (18%), Positives = 49/133 (36%)
Query: 37 EKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSS 96
E S +E ++ P +L ++ SL S+ F + +++P TS
Sbjct: 320 ESSISKTKENAKSNRKRSPKIQAAILQKIDSLPDTESENETFRFSKTANKSKPVVNKTSK 379
Query: 97 SEFQEAAETDYFARGRSSERADPCPTFDPLSAFYAPKTTEECFEVATSTIETQKQVHKSL 156
S +E + + + + + PT + P T+ + +T T T + +
Sbjct: 380 SNQKEKTDEERLSGDKDKDVVQVNPTIPKPKSSKKPTTSTKRQSTSTETQSTSAEGQSTS 439
Query: 157 TIDNLLNTRSQDS 169
T +T Q +
Sbjct: 440 TYGQSTSTEEQST 452
>SB_47249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.1 bits (57), Expect = 8.7
Identities = 24/112 (21%), Positives = 43/112 (38%)
Query: 58 FGKLLLRLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAETDYFARGRSSERA 117
F KL + +P + + + + + + + VT + +A T Y + R+
Sbjct: 3 FNKLFVGIPESCPIRDSLAPCIECKARGRVEEKIEVTLTGVAPSSASTSYASYLRALTPI 62
Query: 118 DPCPTFDPLSAFYAPKTTEECFEVATSTIETQKQVHKSLTIDNLLNTRSQDS 169
P S Y E +EV E Q + +SL ++ L R+Q S
Sbjct: 63 HVLPNDSDYSMDYINVPEEFRYEVVFEDAEGQAALERSLGVNLLRKARNQVS 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.127 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,445,949
Number of Sequences: 59808
Number of extensions: 200269
Number of successful extensions: 499
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 22
length of query: 177
length of database: 16,821,457
effective HSP length: 78
effective length of query: 99
effective length of database: 12,156,433
effective search space: 1203486867
effective search space used: 1203486867
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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