GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001392-TA|BGIBMGA001392-PA|IPR008946|Nuclear receptor,
ligand-binding, IPR000536|Nuclear hormone receptor, ligand-binding
         (177 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    27   0.43 
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          25   1.00 
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          25   1.00 
AF316638-1|AAG45166.1|  211|Anopheles gambiae glutathione S-tran...    25   1.00 
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    25   1.7  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    24   2.3  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    24   2.3  
AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase...    24   2.3  
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             23   5.3  
DQ182017-1|ABA56309.1|  383|Anopheles gambiae G(alpha)s protein.       23   5.3  
AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein...    23   5.3  
AJ010195-1|CAA09034.1|  687|Anopheles gambiae prophenoloxidase p...    23   5.3  

>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 31  HIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLR 64
           H++   EK++C +    R  +P  P R G L +R
Sbjct: 696 HLQLAPEKTECVMISSLRRGHPEIPIRVGGLEIR 729


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 61  LLLRLPSLRTVSSQVIEQLFF------RYQREAQPEDAVTSSSEFQEA 102
           +LL+LP +   + QV+ Q FF      R+  EA     +  +S+ +EA
Sbjct: 90  ILLKLPQVAMATGQVLFQRFFYSKSFVRHSMEATAMSCICLASKIEEA 137


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 61  LLLRLPSLRTVSSQVIEQLFF------RYQREAQPEDAVTSSSEFQEA 102
           +LL+LP +   + QV+ Q FF      R+  EA     +  +S+ +EA
Sbjct: 90  ILLKLPQVAMATGQVLFQRFFYSKSFVRHSMEATAMSCICLASKIEEA 137


>AF316638-1|AAG45166.1|  211|Anopheles gambiae glutathione
           S-transferase D12 protein.
          Length = 211

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 39  SQCALE--EYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQL 79
           S C+L+  +Y  T YPN    F K+   +P L      + E+L
Sbjct: 160 SFCSLDMMKYDLTAYPNVQRWFAKMGTHIPDLEPTRKTIEEEL 202


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 3/145 (2%)

Query: 3   ISRNLHVGKAECQILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLL 62
           I+R ++ GK       +    C +  V    +L   +  A+ +    Q  N P  F  LL
Sbjct: 538 ITRVMNNGKVALDKKRKGDRLCAVVTVDVRNALNSANWTAIGQ--ALQRENTPPYFQALL 595

Query: 63  LRLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAETDYFARGRSSERADPCPT 122
                 RT+     E++  R      P+ +V   + +    + D         RAD    
Sbjct: 596 RNYFVGRTLHYDTDEKVVSRTVSAGVPQGSVLGPTLWNVMYD-DLLRLPLEGLRADIIGF 654

Query: 123 FDPLSAFYAPKTTEECFEVATSTIE 147
            D ++  +  +TTE+   +AT+ +E
Sbjct: 655 ADDVAFTFLGRTTEQVSALATANLE 679


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 91  DAVTSSSEFQEAAETDYFARGRSSERADPCPTF--DPLSAFYAPKTTEECFEVATSTIET 148
           DA T+S+      ETD  A    +E   P      D       P   E+C  +A+   ET
Sbjct: 184 DAPTTSNMAASGDETDLDAITTLAESGIPSSNTSGDDRVDHLLPSPAEQCRILASKPAET 243

Query: 149 QKQVHKSLTIDNLLNTRSQDSC 170
            K        D + +TR    C
Sbjct: 244 IKIDTSGRAFDRMSSTRKSLVC 265


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 91  DAVTSSSEFQEAAETDYFARGRSSERADPCPTF--DPLSAFYAPKTTEECFEVATSTIET 148
           DA T+S+      ETD  A    +E   P      D       P   E+C  +A+   ET
Sbjct: 185 DAPTTSNMAASGDETDLDAITTLAESGIPSSNTSGDDRVDHLLPSPAEQCRILASKPAET 244

Query: 149 QKQVHKSLTIDNLLNTRSQDSC 170
            K        D + +TR    C
Sbjct: 245 IKIDTSGRAFDRMSSTRKSLVC 266


>AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase
           subunit 2 protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 63  LRLPSLRTVSSQVIEQLFFRYQREAQPEDA 92
           +R PS   + +QV + +F RY+R  QP +A
Sbjct: 395 MRDPSFYRLHAQV-DNMFHRYKRTLQPYNA 423


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 89  PEDAVTSSSEFQEAAETDYFARGRSSERADPCPTFDPLSAF-YAPK-TTEECF 139
           P+  + +SS F E    D      ++ R  P PTF  +    + PK  +  CF
Sbjct: 529 PQKHLYTSSPFSEFLALDMKEAPTTNPRIVPIPTFPQIRKLSFVPKMKSRACF 581


>DQ182017-1|ABA56309.1|  383|Anopheles gambiae G(alpha)s protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/35 (31%), Positives = 13/35 (37%)

Query: 76  IEQLFFRYQREAQPEDAVTSSSEFQEAAETDYFAR 110
           +   F  + R   P DAV    E  E     YF R
Sbjct: 297 LSDYFGEFNRYQTPADAVCEMGEDPEVIRAKYFIR 331


>AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 695

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 16/56 (28%), Positives = 21/56 (37%)

Query: 109 ARGRSSERADPCPTFDPLSAFYAPKTTEECFEVATSTIETQKQVHKSLTIDNLLNT 164
           A    S    P  T  P+S      T    F  A+ T E Q+Q  + L   N + T
Sbjct: 608 ASNSGSTVISPNATVCPMSKGATVATLPRKFSTASITEEQQQQQQQPLFYSNFIGT 663


>AJ010195-1|CAA09034.1|  687|Anopheles gambiae prophenoloxidase
           protein.
          Length = 687

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 63  LRLPSLRTVSSQVIEQLFFRYQREAQPEDA 92
           +R P+   + +QV + +F RY+R  QP +A
Sbjct: 396 MRDPAFYRLHAQV-DNMFHRYKRTLQPYNA 424


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,586
Number of Sequences: 2123
Number of extensions: 6890
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 12
length of query: 177
length of database: 516,269
effective HSP length: 60
effective length of query: 117
effective length of database: 388,889
effective search space: 45500013
effective search space used: 45500013
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)