Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001392-TA|BGIBMGA001392-PA|IPR008946|Nuclear receptor,
ligand-binding, IPR000536|Nuclear hormone receptor, ligand-binding
(177 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41559-7|AAV34794.1| 544|Caenorhabditis elegans Nuclear hormone... 37 0.009
U41559-6|AAC24263.1| 583|Caenorhabditis elegans Nuclear hormone... 37 0.009
AF273779-1|AAG15128.1| 565|Caenorhabditis elegans nuclear recep... 37 0.009
AF273778-1|AAG15127.1| 595|Caenorhabditis elegans nuclear recep... 37 0.009
AF273777-1|AAG15126.1| 421|Caenorhabditis elegans nuclear recep... 37 0.009
AF273776-1|AAG15125.1| 583|Caenorhabditis elegans nuclear recep... 37 0.009
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 33 0.087
Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical pr... 31 0.35
Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical pr... 31 0.35
Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical pr... 31 0.35
Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical pr... 31 0.35
AF332206-1|AAK17977.1| 381|Caenorhabditis elegans nuclear recep... 31 0.35
AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear recep... 31 0.35
AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear recep... 31 0.35
AF273792-1|AAG15140.1| 337|Caenorhabditis elegans nuclear recep... 31 0.35
Z73103-7|CAA97428.1| 416|Caenorhabditis elegans Hypothetical pr... 31 0.61
AY204176-1|AAO39180.1| 409|Caenorhabditis elegans nuclear recep... 31 0.61
AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear recep... 31 0.61
AY204173-1|AAO39177.1| 369|Caenorhabditis elegans nuclear recep... 31 0.61
AY204172-1|AAO39176.1| 234|Caenorhabditis elegans nuclear recep... 31 0.61
AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormo... 31 0.61
AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormo... 31 0.61
Z50005-1|CAA90294.1| 334|Caenorhabditis elegans Hypothetical pr... 30 0.81
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ... 30 0.81
U97013-6|AAB52337.1| 221|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z75955-12|CAB00125.1| 412|Caenorhabditis elegans Hypothetical p... 29 1.4
AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear recep... 29 1.4
Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical p... 29 2.5
AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical ... 29 2.5
AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical ... 29 2.5
AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear recep... 29 2.5
Z78539-5|CAB01731.1| 591|Caenorhabditis elegans Hypothetical pr... 28 3.3
AF016436-2|AAC25898.1| 406|Caenorhabditis elegans Hypothetical ... 28 3.3
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 4.3
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 27 5.7
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 27 5.7
U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical pr... 27 7.5
>U41559-7|AAV34794.1| 544|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform c protein.
Length = 544
Score = 36.7 bits (81), Expect = 0.009
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 16 ILARNADACGLSD-VTH-IESLQEKSQCALEEYCRTQYP--NQPTRFGKLLLRLPSLRTV 71
I+ N +A GLS+ H I L++K Q L + + +P + +RFG LLL LP++ T+
Sbjct: 336 IIILNPNAKGLSEHARHAISELRDKVQDMLFQIVKELHPIYSASSRFGNLLLLLPTITTL 395
Query: 72 SSQVIEQLFF 81
S + E + F
Sbjct: 396 SGLMSENMHF 405
>U41559-6|AAC24263.1| 583|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform a protein.
Length = 583
Score = 36.7 bits (81), Expect = 0.009
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 16 ILARNADACGLSD-VTH-IESLQEKSQCALEEYCRTQYP--NQPTRFGKLLLRLPSLRTV 71
I+ N +A GLS+ H I L++K Q L + + +P + +RFG LLL LP++ T+
Sbjct: 375 IIILNPNAKGLSEHARHAISELRDKVQDMLFQIVKELHPIYSASSRFGNLLLLLPTITTL 434
Query: 72 SSQVIEQLFF 81
S + E + F
Sbjct: 435 SGLMSENMHF 444
>AF273779-1|AAG15128.1| 565|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 565
Score = 36.7 bits (81), Expect = 0.009
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 16 ILARNADACGLSD-VTH-IESLQEKSQCALEEYCRTQYP--NQPTRFGKLLLRLPSLRTV 71
I+ N +A GLS+ H I L++K Q L + + +P + +RFG LLL LP++ T+
Sbjct: 357 IIILNPNAKGLSEHARHAISELRDKVQDMLFQIVKELHPIYSASSRFGNLLLLLPTITTL 416
Query: 72 SSQVIEQLFF 81
S + E + F
Sbjct: 417 SGLMSENMHF 426
>AF273778-1|AAG15127.1| 595|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 595
Score = 36.7 bits (81), Expect = 0.009
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 16 ILARNADACGLSD-VTH-IESLQEKSQCALEEYCRTQYP--NQPTRFGKLLLRLPSLRTV 71
I+ N +A GLS+ H I L++K Q L + + +P + +RFG LLL LP++ T+
Sbjct: 387 IIILNPNAKGLSEHARHAISELRDKVQDMLFQIVKELHPIYSASSRFGNLLLLLPTITTL 446
Query: 72 SSQVIEQLFF 81
S + E + F
Sbjct: 447 SGLMSENMHF 456
>AF273777-1|AAG15126.1| 421|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 421
Score = 36.7 bits (81), Expect = 0.009
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 16 ILARNADACGLSD-VTH-IESLQEKSQCALEEYCRTQYP--NQPTRFGKLLLRLPSLRTV 71
I+ N +A GLS+ H I L++K Q L + + +P + +RFG LLL LP++ T+
Sbjct: 213 IIILNPNAKGLSEHARHAISELRDKVQDMLFQIVKELHPIYSASSRFGNLLLLLPTITTL 272
Query: 72 SSQVIEQLFF 81
S + E + F
Sbjct: 273 SGLMSENMHF 282
>AF273776-1|AAG15125.1| 583|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 583
Score = 36.7 bits (81), Expect = 0.009
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 16 ILARNADACGLSD-VTH-IESLQEKSQCALEEYCRTQYP--NQPTRFGKLLLRLPSLRTV 71
I+ N +A GLS+ H I L++K Q L + + +P + +RFG LLL LP++ T+
Sbjct: 375 IIILNPNAKGLSEHARHAISELRDKVQDMLFQIVKELHPIYSASSRFGNLLLLLPTITTL 434
Query: 72 SSQVIEQLFF 81
S + E + F
Sbjct: 435 SGLMSENMHF 444
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
protein T28C6.9 protein.
Length = 1861
Score = 33.5 bits (73), Expect = 0.087
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
Query: 2 KISRNLHVGKAECQILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKL 61
++ R + +A+ R DA T +E Q++ A EE RT +L
Sbjct: 226 ELQRQQEIHRAQFDAACREMDADEPERKTSLEVQQDQYILAYEEKIRTMSQEMEALKREL 285
Query: 62 LLRLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSS-EFQEAAETDYFARGRSSERADPC 120
L+ ++ ++QV+E + QP TS++ + E++ SS
Sbjct: 286 ELKNGPVQRKTTQVLEPPSIEQIQMVQPVQMTTSAAPQASESSHQYEMTTSTSSSEKRRA 345
Query: 121 PTFDPLSAFYAPKTTEE 137
P PL A Y + +++
Sbjct: 346 PVSAPLPAQYLVQQSQQ 362
>Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical
protein K10C3.6d protein.
Length = 486
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 22 DACGLSDVTHIESLQEKSQC--ALEEYCRTQYPNQ-PTRFGKLLLRLPSLRTVSSQVIEQ 78
+A GLS+ + I +++ AL + Q P+ PTR+G +LL P+L+ ++ +IE
Sbjct: 325 EAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIEN 384
Query: 79 L 79
+
Sbjct: 385 M 385
>Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical
protein K10C3.6c protein.
Length = 501
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 22 DACGLSDVTHIESLQEKSQC--ALEEYCRTQYPNQ-PTRFGKLLLRLPSLRTVSSQVIEQ 78
+A GLS+ + I +++ AL + Q P+ PTR+G +LL P+L+ ++ +IE
Sbjct: 340 EAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIEN 399
Query: 79 L 79
+
Sbjct: 400 M 400
>Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical
protein K10C3.6b protein.
Length = 476
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 22 DACGLSDVTHIESLQEKSQC--ALEEYCRTQYPNQ-PTRFGKLLLRLPSLRTVSSQVIEQ 78
+A GLS+ + I +++ AL + Q P+ PTR+G +LL P+L+ ++ +IE
Sbjct: 315 EAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIEN 374
Query: 79 L 79
+
Sbjct: 375 M 375
>Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical
protein K10C3.6a protein.
Length = 477
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 22 DACGLSDVTHIESLQEKSQC--ALEEYCRTQYPNQ-PTRFGKLLLRLPSLRTVSSQVIEQ 78
+A GLS+ + I +++ AL + Q P+ PTR+G +LL P+L+ ++ +IE
Sbjct: 316 EAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIEN 375
Query: 79 L 79
+
Sbjct: 376 M 376
>AF332206-1|AAK17977.1| 381|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 381
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 22 DACGLSDVTHIESLQEKSQC--ALEEYCRTQYPNQ-PTRFGKLLLRLPSLRTVSSQVIEQ 78
+A GLS+ + I +++ AL + Q P+ PTR+G +LL P+L+ ++ +IE
Sbjct: 310 EAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIEN 369
Query: 79 L 79
+
Sbjct: 370 M 370
>AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 475
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 22 DACGLSDVTHIESLQEKSQC--ALEEYCRTQYPNQ-PTRFGKLLLRLPSLRTVSSQVIEQ 78
+A GLS+ + I +++ AL + Q P+ PTR+G +LL P+L+ ++ +IE
Sbjct: 314 EAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIEN 373
Query: 79 L 79
+
Sbjct: 374 M 374
>AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 474
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 22 DACGLSDVTHIESLQEKSQC--ALEEYCRTQYPNQ-PTRFGKLLLRLPSLRTVSSQVIEQ 78
+A GLS+ + I +++ AL + Q P+ PTR+G +LL P+L+ ++ +IE
Sbjct: 313 EAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIEN 372
Query: 79 L 79
+
Sbjct: 373 M 373
>AF273792-1|AAG15140.1| 337|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 337
Score = 31.5 bits (68), Expect = 0.35
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 22 DACGLSDVTHIESLQEKSQC--ALEEYCRTQYPNQ-PTRFGKLLLRLPSLRTVSSQVIEQ 78
+A GLS+ + I +++ AL + Q P+ PTR+G +LL P+L+ ++ +IE
Sbjct: 176 EAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIEN 235
Query: 79 L 79
+
Sbjct: 236 M 236
>Z73103-7|CAA97428.1| 416|Caenorhabditis elegans Hypothetical
protein C08F8.8 protein.
Length = 416
Score = 30.7 bits (66), Expect = 0.61
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 86 EAQPEDAVTSSSEFQEAAETDYFARGRSSERADPCPTFDPLSAFYAPKTTEECFEVATST 145
+ + ED TSS++F E + TD RS DP F L++ P + S+
Sbjct: 339 DIEEEDDATSSNQFDENSSTD----DRSVGELDPVQLFLALNSSTQPS--------SASS 386
Query: 146 IETQKQVHKSLTIDNLLNTRSQDSCSIQEM 175
+ + H +I LL+ + ++S +++E+
Sbjct: 387 PSSSRPRHSIRSITELLSIQEEESVNVEEV 416
>AY204176-1|AAO39180.1| 409|Caenorhabditis elegans nuclear receptor
NHR-67 protein.
Length = 409
Score = 30.7 bits (66), Expect = 0.61
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 86 EAQPEDAVTSSSEFQEAAETDYFARGRSSERADPCPTFDPLSAFYAPKTTEECFEVATST 145
+ + ED TSS++F E + TD RS DP F L++ P + S+
Sbjct: 332 DIEEEDDATSSNQFDENSSTD----DRSVGELDPVQLFLALNSSTQPS--------SASS 379
Query: 146 IETQKQVHKSLTIDNLLNTRSQDSCSIQEM 175
+ + H +I LL+ + ++S +++E+
Sbjct: 380 PSSSRPRHSIRSITELLSIQEEESVNVEEV 409
>AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 344
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 32 IESLQEKSQCALEEYCR--TQYPNQPTRFGKLLLRLPSLRTVSSQVIEQL 79
+E ++++ + E + R + Y + P RF LLL LP + +S ++E +
Sbjct: 256 VEEMRQRILESFERHVRYVSPYKDMPLRFANLLLLLPPMLAISRDLVEDV 305
>AY204173-1|AAO39177.1| 369|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 369
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 32 IESLQEKSQCALEEYCR--TQYPNQPTRFGKLLLRLPSLRTVSSQVIEQL 79
+E ++++ + E + R + Y + P RF LLL LP + +S ++E +
Sbjct: 281 VEEMRQRILESFERHVRYVSPYKDMPLRFANLLLLLPPMLAISRDLVEDV 330
>AY204172-1|AAO39176.1| 234|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 234
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 32 IESLQEKSQCALEEYCR--TQYPNQPTRFGKLLLRLPSLRTVSSQVIEQL 79
+E ++++ + E + R + Y + P RF LLL LP + +S ++E +
Sbjct: 146 VEEMRQRILESFERHVRYVSPYKDMPLRFANLLLLLPPMLAISRDLVEDV 195
>AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform b protein.
Length = 387
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 32 IESLQEKSQCALEEYCR--TQYPNQPTRFGKLLLRLPSLRTVSSQVIEQL 79
+E ++++ + E + R + Y + P RF LLL LP + +S ++E +
Sbjct: 299 VEEMRQRILESFERHVRYVSPYKDMPLRFANLLLLLPPMLAISRDLVEDV 348
>AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform a protein.
Length = 412
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 32 IESLQEKSQCALEEYCR--TQYPNQPTRFGKLLLRLPSLRTVSSQVIEQL 79
+E ++++ + E + R + Y + P RF LLL LP + +S ++E +
Sbjct: 324 VEEMRQRILESFERHVRYVSPYKDMPLRFANLLLLLPPMLAISRDLVEDV 373
>Z50005-1|CAA90294.1| 334|Caenorhabditis elegans Hypothetical
protein F16H9.2 protein.
Length = 334
Score = 30.3 bits (65), Expect = 0.81
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 30 THIESLQEKSQCALEEYCRTQYP-NQPTRFGKLLLRLPSLRTVSSQVIE--QLFFRYQRE 86
T + S Q + AL +YC T Y N P+RF LL L + + + LF +Q
Sbjct: 260 TLLNSYQNVYRSALFQYCSTAYQRNGPSRFNDLLFLLHVVTKTHDDIKKYFTLFQFFQPT 319
Query: 87 AQPEDAVTSSSEF 99
QP EF
Sbjct: 320 EQPSQVHQDVIEF 332
>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
protein Y102A11A.3 protein.
Length = 1571
Score = 30.3 bits (65), Expect = 0.81
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 65 LPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAETDYFARGRSSERADPCPTFD 124
+P R S ++IE F+ + AVT ++ +T + + R+ ER C T D
Sbjct: 1292 IPLARNQSCKIIEDTFYTEYIADKTASAVTEKENVEDCTDTSFCDQSRNVERC--CTTLD 1349
>U97013-6|AAB52337.1| 221|Caenorhabditis elegans Hypothetical
protein F28H1.1 protein.
Length = 221
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 119 PCPTFDPLSAFYAPKTTEECFEVATSTIETQKQVHKSLTIDNLLNTRSQDSCSIQE 174
P PTF P P T E T+++ + ++ + TI+ +LN +S S SI E
Sbjct: 157 PLPTFQPY-----PSTRSYSLESPTTSVTSNEEKNSWKTIELILNQKSSRSPSITE 207
>Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical
protein T23H4.2 protein.
Length = 373
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 57 RFGKLLLRLPSLRTVSSQVIEQL 79
R GKLLL LPSL+ ++ Q++E +
Sbjct: 300 RSGKLLLLLPSLQAIAQQLVEDV 322
>Z75955-12|CAB00125.1| 412|Caenorhabditis elegans Hypothetical
protein R07B7.16 protein.
Length = 412
Score = 29.5 bits (63), Expect = 1.4
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 16 ILARNADACGLS--DVTHIESLQEKSQCALEEYCRTQYP--NQPTRFGKLLLRLPSLRTV 71
IL RN GL+ D IE+ + + AL EY + + P RFG L+ P + T
Sbjct: 319 ILMRNPSVPGLTLDDQLIIENERNQYAKALLEYTILHHGVLSGPARFGSLIAINPIIETQ 378
Query: 72 SSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAET 105
S + + F AQ E + S F E ++
Sbjct: 379 SKKQKDVYVFMKTLSAQRECSHPPKSLFDEVMDS 412
>AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear receptor
NHR-69 protein.
Length = 373
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 57 RFGKLLLRLPSLRTVSSQVIEQL 79
R GKLLL LPSL+ ++ Q++E +
Sbjct: 300 RSGKLLLLLPSLQAIAQQLVEDV 322
>Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 16 ILARNADACGLSD--VTHIESLQEKSQCALEEYC--RTQYPNQPTRFGKLLLRLPSLRTV 71
++A N DA GLS + I L+E+ AL + ++ +R ++LL +P L +
Sbjct: 319 LIALNPDANGLSSDAESSIRMLRERVHTALFQLLMENSEPITAASRLAQILLLIPQLSLM 378
Query: 72 SSQVIEQLFFR 82
VIEQ+ R
Sbjct: 379 GVDVIEQVKVR 389
>AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 16 ILARNADACGLSD--VTHIESLQEKSQCALEEYC--RTQYPNQPTRFGKLLLRLPSLRTV 71
++A N DA GLS + I L+E+ AL + ++ +R ++LL +P L +
Sbjct: 319 LIALNPDANGLSSDAESSIRMLRERVHTALFQLLMENSEPITAASRLAQILLLIPQLSLM 378
Query: 72 SSQVIEQLFFR 82
VIEQ+ R
Sbjct: 379 GVDVIEQVKVR 389
>AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical
protein H27C11.1b protein.
Length = 339
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 16 ILARNADACGLSD--VTHIESLQEKSQCALEEYC--RTQYPNQPTRFGKLLLRLPSLRTV 71
++A N DA GLS + I L+E+ AL + ++ +R ++LL +P L +
Sbjct: 219 LIALNPDANGLSSDAESSIRMLRERVHTALFQLLMENSEPITAASRLAQILLLIPQLSLM 278
Query: 72 SSQVIEQLFFR 82
VIEQ+ R
Sbjct: 279 GVDVIEQVKVR 289
>AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear receptor
NHR-97 protein.
Length = 439
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 16 ILARNADACGLSD--VTHIESLQEKSQCALEEYC--RTQYPNQPTRFGKLLLRLPSLRTV 71
++A N DA GLS + I L+E+ AL + ++ +R ++LL +P L +
Sbjct: 319 LIALNPDANGLSSDAESSIRMLRERVHTALFQLLMENSEPITAASRLAQILLLIPQLSLM 378
Query: 72 SSQVIEQLFFR 82
VIEQ+ R
Sbjct: 379 GVDVIEQVKVR 389
>Z78539-5|CAB01731.1| 591|Caenorhabditis elegans Hypothetical
protein C31E10.6 protein.
Length = 591
Score = 28.3 bits (60), Expect = 3.3
Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 1/117 (0%)
Query: 38 KSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRT-VSSQVIEQLFFRYQREAQPEDAVTSS 96
+ + L E QY Q KL ++ S + + Q ++LF E+ +
Sbjct: 236 RHKTGLSEISEAQYEKQRQDLKKLSNKIYSASSDTTKQFADKLFSAIDNLHLAENIIELE 295
Query: 97 SEFQEAAETDYFARGRSSERADPCPTFDPLSAFYAPKTTEECFEVATSTIETQKQVH 153
F+E A Y R SE ++F E +V +TI H
Sbjct: 296 QRFKEEAALYYAMYARFSELEAQLSAATKYTSFLTSFEVERITDVVATTISRASMFH 352
>AF016436-2|AAC25898.1| 406|Caenorhabditis elegans Hypothetical
protein F38H12.3 protein.
Length = 406
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 5 RNLHVGKAECQILAR----NADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQ-PTRFG 59
+NLH+ + EC IL G ++ L K L ++ + P+ P RFG
Sbjct: 306 KNLHIDEFECAILKTVLLLTPSFPGHVTYKDLQYLHNKCMSELMDHSIQRSPDAGPERFG 365
Query: 60 KLLLRLPSLR 69
+++L + S+R
Sbjct: 366 EIILLISSIR 375
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical
protein ZK270.2e protein.
Length = 4541
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 64 RLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAETDYFAR 110
+L +L S++ ++ F RY+R P+ + TSS + +A T FA+
Sbjct: 381 KLQTLNLTDSELEQRQFERYRRALTPK-SYTSSRQDDDAVSTATFAK 426
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical
protein ZK270.2d protein.
Length = 4648
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 64 RLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAETDYFAR 110
+L +L S++ ++ F RY+R P+ + TSS + +A T FA+
Sbjct: 370 KLQTLNLTDSELEQRQFERYRRALTPK-SYTSSRQDDDAVSTATFAK 415
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical
protein ZK270.2a protein.
Length = 4530
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 64 RLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAETDYFAR 110
+L +L S++ ++ F RY+R P+ + TSS + +A T FA+
Sbjct: 370 KLQTLNLTDSELEQRQFERYRRALTPK-SYTSSRQDDDAVSTATFAK 415
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical
protein ZK270.2e protein.
Length = 4541
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 64 RLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAETDYFAR 110
+L +L S++ ++ F RY+R P+ + TSS + +A T FA+
Sbjct: 381 KLQTLNLTDSELEQRQFERYRRALTPK-SYTSSRQDDDAVSTATFAK 426
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical
protein ZK270.2d protein.
Length = 4648
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 64 RLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAETDYFAR 110
+L +L S++ ++ F RY+R P+ + TSS + +A T FA+
Sbjct: 370 KLQTLNLTDSELEQRQFERYRRALTPK-SYTSSRQDDDAVSTATFAK 415
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical
protein ZK270.2a protein.
Length = 4530
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 64 RLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAETDYFAR 110
+L +L S++ ++ F RY+R P+ + TSS + +A T FA+
Sbjct: 370 KLQTLNLTDSELEQRQFERYRRALTPK-SYTSSRQDDDAVSTATFAK 415
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 16 ILARNADACGLSDVTH--IESLQEKSQCALEEYCRTQYPNQPT---RFGKLLLRLPSLRT 70
++ + DA GLS T + ++++ Q AL R N + RFG LLL P L
Sbjct: 338 LIILDPDARGLSQETSQALLGIRDRVQNALFNLIRDNSNNMTSVTSRFGNLLLLFPPLAK 397
Query: 71 VSSQVIEQL 79
+SS + E +
Sbjct: 398 LSSLIGENV 406
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 16 ILARNADACGLSDVTH--IESLQEKSQCALEEYCRTQYPNQPT---RFGKLLLRLPSLRT 70
++ + DA GLS T + ++++ Q AL R N + RFG LLL P L
Sbjct: 333 LIILDPDARGLSQETSQALLGIRDRVQNALFNLIRDNSNNMTSVTSRFGNLLLLFPPLAK 392
Query: 71 VSSQVIEQL 79
+SS + E +
Sbjct: 393 LSSLIGENV 401
>U23177-2|AAA64331.2| 538|Caenorhabditis elegans Hypothetical
protein C56G2.4 protein.
Length = 538
Score = 27.1 bits (57), Expect = 7.5
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 52 PNQPTRFGKLLLRLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAETDYFARG 111
P Q F + RL ++T S + L+ P +S A E D+F+
Sbjct: 62 PPQLASFHSIASRLFRVKTYHSAYLRNLYIF------PRVTYRASPGHYRACEHDFFSGN 115
Query: 112 RSSERADPCPTFDPLSAFYAPKTTE 136
S+ +AD P DP+ F K E
Sbjct: 116 TSAVQAD--PDMDPVEPFRIRKRPE 138
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.127 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,098,905
Number of Sequences: 27539
Number of extensions: 154699
Number of successful extensions: 466
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 43
length of query: 177
length of database: 12,573,161
effective HSP length: 77
effective length of query: 100
effective length of database: 10,452,658
effective search space: 1045265800
effective search space used: 1045265800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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