GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001392-TA|BGIBMGA001392-PA|IPR008946|Nuclear receptor,
ligand-binding, IPR000536|Nuclear hormone receptor, ligand-binding
         (177 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    61   7e-12
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    61   7e-12
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    40   2e-05
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    29   0.034
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.2  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 60.9 bits (141), Expect = 7e-12
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query: 16  ILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQV 75
           I+  N +  GL  +  +  L+EK   ALE YCR  +P+   RF KLLLRLP++R++  + 
Sbjct: 339 IILFNPEVRGLKSIQEVTLLREKIYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKC 398

Query: 76  IEQLFF 81
           +E LFF
Sbjct: 399 LEYLFF 404


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 60.9 bits (141), Expect = 7e-12
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query: 16  ILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQV 75
           I+  N +  GL  +  +  L+EK   ALE YCR  +P+   RF KLLLRLP++R++  + 
Sbjct: 339 IILFNPEVRGLKSIQEVTLLREKIYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKC 398

Query: 76  IEQLFF 81
           +E LFF
Sbjct: 399 LEYLFF 404


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 39.5 bits (88), Expect = 2e-05
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 14  CQILARNADACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSS 73
           C ++   AD  GL +   +E +  K + AL+      +P  P    +LL ++P LRT+++
Sbjct: 341 CSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQNHPQHPDILRELLKKIPDLRTLNT 400

Query: 74  QVIEQLF-FRYQREAQPEDAVTSSSEFQEAAE 104
              E+L  F+   + Q   A     + Q+  +
Sbjct: 401 LHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQ 432


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 0.034
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 32  IESLQEKSQCALEEYC-RTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLF 80
           +E +QE    AL  Y    + PN  T F +LL  L  LRT+ +Q  E  F
Sbjct: 497 VEKIQEIYLEALRAYVDNRRRPNPGTVFARLLSVLTELRTLGNQNSEMCF 546


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 152 VHKSLTIDNLLNTRSQDSC 170
           +HK L I+N+   R   SC
Sbjct: 129 IHKDLPINNVQGLRGLKSC 147


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 152 VHKSLTIDNLLNTRSQDSC 170
           +HK L I+N+   R   SC
Sbjct: 129 IHKDLPINNVQGLRGLKSC 147


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 152 VHKSLTIDNLLNTRSQDSC 170
           +HK L I+N+   R   SC
Sbjct: 129 IHKDLPINNVQGLRGLKSC 147


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,266
Number of Sequences: 429
Number of extensions: 1548
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 177
length of database: 140,377
effective HSP length: 54
effective length of query: 123
effective length of database: 117,211
effective search space: 14416953
effective search space used: 14416953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)