GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001392-TA|BGIBMGA001392-PA|IPR008946|Nuclear receptor,
ligand-binding, IPR000536|Nuclear hormone receptor, ligand-binding
         (177 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39940.1 68418.m04843 expressed protein                             31   0.33 
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si...    30   1.0  
At3g21870.1 68416.m02758 cyclin family protein similar to cyclin...    29   1.3  
At4g26080.1 68417.m03755 protein phosphatase 2C ABI1 / PP2C ABI1...    28   4.1  
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ...    27   5.4  
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '...    27   7.1  
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '...    27   7.1  

>At5g39940.1 68418.m04843 expressed protein
          Length = 480

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 41  CALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQ 100
           C  +   + QY ++    G + L   SL+T+ S+++  LFF    E    D VT    FQ
Sbjct: 390 CTFQVTGKGQYKDEFVTAGGVPLSEVSLKTMESKLVPNLFF--AGEVLNVDGVTGGFNFQ 447

Query: 101 EAAETDYFARGRSSERA 117
            A    Y A     E A
Sbjct: 448 NAWSGGYIAGTNIGELA 464


>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 366

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 81  FRYQREAQPEDAVTSSSEFQEAAETDYFARGRSSERADPCPTFDPLS 127
           + Y     P +AV  S ++      D++  G S     P P +DP++
Sbjct: 182 YSYYSVLHPVNAVADSLDWVNLVAYDFYESGSSRVTCSPAPLYDPIT 228


>At3g21870.1 68416.m02758 cyclin family protein similar to cyclin 2
           [Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
           cruzi] GI:12005317; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 210

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 60  KLLLRLPSLRTVSSQVIEQLFFRYQREAQPEDAVTSSSEFQEAAET 105
           +LL  L    TVS +V E   F  ++E Q  DAV+S  + Q   E+
Sbjct: 153 ELLFLLDFRVTVSFRVFESYCFHLEKEMQLNDAVSSLKDIQPMQES 198


>At4g26080.1 68417.m03755 protein phosphatase 2C ABI1 / PP2C ABI1
          / abscisic acid-insensitive 1 (ABI1) nearly identical
          to SP|P49597 Protein phosphatase 2C ABI1 (EC 3.1.3.16)
          (PP2C) (Abscisic acid- insensitive 1) {Arabidopsis
          thaliana}
          Length = 434

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 46 YCRTQYPNQPTRFGKLLLRLPSLRTVS 72
          YC  QY NQ +  G L++ LP   + S
Sbjct: 31 YCNNQYSNQDSENGDLMVSLPETSSCS 57


>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
           transcription factor jumonji (jmj) family protein
           contains Pfam domians PF02375: jmjN domain, PF02373:
           jmjC domain and PF00096: Zinc finger, C2H2 type
          Length = 1327

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 46  YCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFRY-QREAQPEDAVTSSSEFQEAAE 104
           YC     N PT+  +  L L  L + +SQ+++    R+ QR+++ +   +S+S F     
Sbjct: 728 YCVKVRKNSPTKKIQHALSLGGLFSDTSQMLDFTTIRWLQRKSRSKAKPSSTSSFTPCEH 787

Query: 105 TDYFARGRSSERAD 118
            +  A G+  +  D
Sbjct: 788 LEVKADGKLRDNLD 801


>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 140  EVATSTIETQKQVHKSLTIDNLLNTRSQDSCSIQE 174
            E A  T E ++  H     DN+L+ ++++ CS+ +
Sbjct: 1411 EEALVTTENRRTSHVGFDTDNILDQQNREDCSLDQ 1445


>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 140  EVATSTIETQKQVHKSLTIDNLLNTRSQDSCSIQE 174
            E A  T E ++  H     DN+L+ ++++ CS+ +
Sbjct: 1411 EEALVTTENRRTSHVGFDTDNILDQQNREDCSLDQ 1445


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,742,339
Number of Sequences: 28952
Number of extensions: 135193
Number of successful extensions: 378
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 9
length of query: 177
length of database: 12,070,560
effective HSP length: 77
effective length of query: 100
effective length of database: 9,841,256
effective search space: 984125600
effective search space used: 984125600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)