GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001391-TA|BGIBMGA001391-PA|IPR000536|Nuclear hormone
receptor, ligand-binding, IPR008946|Nuclear receptor, ligand-binding,
IPR013629|Zinc finger, C4-type, C-terminal
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   2.6  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    27   4.6  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   4.6  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 70   QPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELF 121
            +PT  +  +NIC L A+ L   VE+ R    F  + +T     +RLV S+ +
Sbjct: 1213 EPTTNLDEENICSL-AKNLSRIVEFRRKQANFQLIVITHDEQFIRLVNSDAY 1263


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 187 VLFTTGKILDSLFGEARLLLYRVAGAGVAVTNYTEL 222
           + + T  ILD+  GE++  +Y+ +G    VT + +L
Sbjct: 197 IAYPTALILDACLGESQSTMYKKSGLKTLVTLHRDL 232


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 68  CVQPTNVMGIDNICELAARLLFSAVEW 94
           C+ P N +G + + E+ A   F +V W
Sbjct: 937 CMNPANRLGANGVEEIKAHPFFKSVNW 963


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,240,467
Number of Sequences: 5004
Number of extensions: 45803
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 4
length of query: 314
length of database: 2,362,478
effective HSP length: 73
effective length of query: 241
effective length of database: 1,997,186
effective search space: 481321826
effective search space used: 481321826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)