BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001391-TA|BGIBMGA001391-PA|IPR000536|Nuclear hormone receptor, ligand-binding, IPR008946|Nuclear receptor, ligand-binding, IPR013629|Zinc finger, C4-type, C-terminal (314 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 2.6 SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 27 4.6 SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 4.6 >SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizosaccharomyces pombe|chr 1|||Manual Length = 1290 Score = 27.5 bits (58), Expect = 2.6 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 70 QPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELF 121 +PT + +NIC L A+ L VE+ R F + +T +RLV S+ + Sbjct: 1213 EPTTNLDEENICSL-AKNLSRIVEFRRKQANFQLIVITHDEQFIRLVNSDAY 1263 >SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 679 Score = 26.6 bits (56), Expect = 4.6 Identities = 11/36 (30%), Positives = 21/36 (58%) Query: 187 VLFTTGKILDSLFGEARLLLYRVAGAGVAVTNYTEL 222 + + T ILD+ GE++ +Y+ +G VT + +L Sbjct: 197 IAYPTALILDACLGESQSTMYKKSGLKTLVTLHRDL 232 >SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1338 Score = 26.6 bits (56), Expect = 4.6 Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 68 CVQPTNVMGIDNICELAARLLFSAVEW 94 C+ P N +G + + E+ A F +V W Sbjct: 937 CMNPANRLGANGVEEIKAHPFFKSVNW 963 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.320 0.134 0.398 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,240,467 Number of Sequences: 5004 Number of extensions: 45803 Number of successful extensions: 142 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 139 Number of HSP's gapped (non-prelim): 4 length of query: 314 length of database: 2,362,478 effective HSP length: 73 effective length of query: 241 effective length of database: 1,997,186 effective search space: 481321826 effective search space used: 481321826 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 54 (25.8 bits)
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