Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001391-TA|BGIBMGA001391-PA|IPR000536|Nuclear hormone
receptor, ligand-binding, IPR008946|Nuclear receptor, ligand-binding,
IPR013629|Zinc finger, C4-type, C-terminal
(314 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1569 - 27924930-27925034,27925149-27925167,27925271-279254... 31 1.2
02_01_0513 + 3715406-3715543,3716298-3716708,3716882-3717085,371... 31 1.6
07_03_1558 - 27722852-27722963,27723191-27723240,27723338-277234... 30 2.8
01_06_0642 + 30811708-30811768,30812256-30812305,30812455-308129... 29 3.7
09_03_0082 + 12166464-12166526,12167350-12167376,12167921-121679... 29 4.8
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 29 4.8
01_06_1012 - 33806190-33807875,33807963-33808331 29 6.4
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 28 8.5
>08_02_1569 -
27924930-27925034,27925149-27925167,27925271-27925490,
27925925-27925971,27926502-27927025
Length = 304
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 271 YGSFLSTPSRLPSN---YTSSPRVPEASTSSPF 300
YG + STPS P++ YT++P P AS+SS +
Sbjct: 9 YGGYGSTPSAPPASSYGYTTTPSAPPASSSSSY 41
>02_01_0513 +
3715406-3715543,3716298-3716708,3716882-3717085,
3717552-3717729,3717833-3717951
Length = 349
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 136 PLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKIL 195
P+ AA + A A D +A E +KLKA H + AE ++ +++ TTG ++
Sbjct: 32 PVRAAVAVQAEAQAKDSPLALAQA----HETRDKLKAAHSELAEEGAVEIVIIKTTGDMI 87
>07_03_1558 -
27722852-27722963,27723191-27723240,27723338-27723406,
27723507-27723571,27724058-27724145,27724294-27724362
Length = 150
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 175 VDSAEYSCLKAIV-LFTTGKILDSLFGEARLLLYRVAGAG-VAVTNY 219
+D+A Y L+ +V LFT G LDS + R L+ + G +AV Y
Sbjct: 22 IDAARYDDLEDVVALFTAGVSLDSADSQGRTALHMASANGHLAVVQY 68
>01_06_0642 +
30811708-30811768,30812256-30812305,30812455-30812926,
30813237-30813596,30813694-30814101,30814383-30814453,
30814553-30814629,30814741-30814888,30815878-30816039,
30816119-30816304
Length = 664
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 116 VWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 156
VW A+ +P+ V LLAAAGL P A V+F
Sbjct: 153 VWPAAAAAGAAPAGLPVLVFLLLAAAGLRVVPFLASGDVSF 193
>09_03_0082 +
12166464-12166526,12167350-12167376,12167921-12167993,
12168517-12168773
Length = 139
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 265 VNSSLSYGSFLSTPSRLPSNYTSSPRVPEASTSSPFKP 302
+N+ + Y S S P R S+Y+SS P A T+S P
Sbjct: 57 INTIVCYRSSPSLPQRPRSSYSSSSPCPHAFTTSTVAP 94
>05_01_0166 +
1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 160 IRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
++ F E +EKL H D SC K ++LF
Sbjct: 182 VKYFSEVLEKLSKRHRDIISKSCFKTLLLF 211
>01_06_1012 - 33806190-33807875,33807963-33808331
Length = 684
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 87 LLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 137
+LF A A+++ ELQ + L+R+VW E+ AS+C H L
Sbjct: 598 VLFDACRLAKSLL---ELQPGKRWRLIRVVWVEILCYAASKCRSNFHAKQL 645
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 266 NSSLSYGSFLSTPSRLPSNYTSSPRVPEASTSSPFKPW 303
+SS S S+ S + PS+ +S P P+ ++ PW
Sbjct: 85 SSSSSTASYASAVAATPSSSSSGPAAPQLASDCLLPPW 122
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,187,190
Number of Sequences: 37544
Number of extensions: 314511
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 8
length of query: 314
length of database: 14,793,348
effective HSP length: 82
effective length of query: 232
effective length of database: 11,714,740
effective search space: 2717819680
effective search space used: 2717819680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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