Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001391-TA|BGIBMGA001391-PA|IPR000536|Nuclear hormone
receptor, ligand-binding, IPR008946|Nuclear receptor, ligand-binding,
IPR013629|Zinc finger, C4-type, C-terminal
(314 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 242 3e-64
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 141 6e-34
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 2e-27
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 98 7e-21
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 85 7e-17
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 8e-15
SB_5770| Best HMM Match : Hormone_recep (HMM E-Value=3.4e-22) 76 4e-14
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 69 4e-12
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 63 3e-10
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 55 9e-08
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 50 2e-06
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 44 2e-04
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 40 0.003
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0) 32 0.70
SB_15097| Best HMM Match : p450 (HMM E-Value=0) 29 4.9
SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 242 bits (592), Expect = 3e-64
Identities = 119/183 (65%), Positives = 143/183 (78%), Gaps = 5/183 (2%)
Query: 10 SVQRGRVXXXXXXXXXXXXXFTLGNGDPGAGLNNHPYLSSYISLLLRAEPYPASRYSPCV 69
+VQRGR+ G+G N H YLS +I+LLLRAEPYP +R+ +
Sbjct: 312 AVQRGRIPAAQTPTQNAALPGINGDGST----NGHSYLSGFIALLLRAEPYPTTRFQQGL 367
Query: 70 Q-PTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQC 128
P +MGI+NICELAARLLFSAVEWARNIPFFP+L VTDQVALLRLVWSELFVLNA+QC
Sbjct: 368 NMPCGIMGIENICELAARLLFSAVEWARNIPFFPDLAVTDQVALLRLVWSELFVLNAAQC 427
Query: 129 SMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 188
MPL VAPLLA AG+H++ M+ DR+V+FMD+IRIFQEQVEKL+ LHVD+AE++CLKAIVL
Sbjct: 428 PMPLQVAPLLATAGIHSNHMSPDRMVSFMDNIRIFQEQVEKLRNLHVDAAEFACLKAIVL 487
Query: 189 FTT 191
FT+
Sbjct: 488 FTS 490
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 141 bits (342), Expect = 6e-34
Identities = 78/159 (49%), Positives = 108/159 (67%), Gaps = 12/159 (7%)
Query: 41 LNNHP-YLSSYISLLLRAEPYPASRYSPCVQ-PTNVMGIDNICELAARLLFSAVEWARNI 98
+N H + SSYI+LLLRA+ +RY + P N+ G++N ELAARLL SAVEWA+NI
Sbjct: 171 MNGHQSFYSSYITLLLRADTI--ARYQQSLTLPCNINGLENTPELAARLLVSAVEWAKNI 228
Query: 99 PFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA--AAGL--HASPMAADRVV 154
PF+ +L + DQ LLR WSELF LNA+Q P H++P L ++G + RV+
Sbjct: 229 PFYSDLPLPDQAVLLRSCWSELFTLNAAQHCSPFHISPTLTSNSSGFAGNGGGYLNTRVM 288
Query: 155 AFMD----HIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
+ D ++++F+EQVEKLK +H+DSAE++CLKAIVLF
Sbjct: 289 SAFDCQNNNMKLFEEQVEKLKNMHIDSAEFACLKAIVLF 327
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 120 bits (289), Expect = 2e-27
Identities = 60/112 (53%), Positives = 76/112 (67%)
Query: 78 DNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 137
D+I E A +LL+ +V WARNIP F +L DQ LL WSELFVL+++Q S+PL + PL
Sbjct: 227 DSIYESAVQLLYMSVTWARNIPTFLDLPFRDQAILLEEGWSELFVLSSAQFSLPLDMGPL 286
Query: 138 LAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
L+AAGL DR+VA M IR+ Q V + K L +DS EY+CLKAIVLF
Sbjct: 287 LSAAGLQVDKAPTDRIVAGMADIRLLQNIVTRFKRLQIDSTEYACLKAIVLF 338
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 98.3 bits (234), Expect = 7e-21
Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Query: 37 PGAGLNNHPYLSSYISLLLRAEPYPASRYSPC-VQPTNVMGIDNICELAARLLFSAVEWA 95
P G N Y + L L P+ A P + P N D ELAA +LF+ V+WA
Sbjct: 141 PFYGDVNTMYAQTMFPLTLFQSPFNAPLTFPMGMVPLNQNRTDVAYELAANVLFAVVDWA 200
Query: 96 RNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 155
R + F L +DQ+ LL++ W++LF+L AS+ + L+V + A ++ + +V
Sbjct: 201 RKLTTFNNLMDSDQITLLKMAWTDLFLLEASRSPLQLYVQQMYATINAQTKQLSMEVIVK 260
Query: 156 FMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
M++ R+FQEQ E+++ L +D E+ LK IVLF
Sbjct: 261 RMEYARLFQEQAERIRNLGMDMTEHFHLKCIVLF 294
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 85.0 bits (201), Expect = 7e-17
Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 69 VQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQC 128
V+P + + +NI + A RLL +++ +ARN+P F L DQ+ LL W ELF+L+A+
Sbjct: 207 VEPIHFIVSENIQDAATRLLSASIRFARNVPCFTRLPFRDQIILLEEGWKELFLLDAAYW 266
Query: 129 SMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 188
++PL +A LLA G D I++ QE + +L++ +D E +CLKAIVL
Sbjct: 267 ALPLEIASLLAVTG----GCHGDSYRHKASEIKLLQELLARLRSFQMDLNELACLKAIVL 322
Query: 189 F 189
F
Sbjct: 323 F 323
>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 78.2 bits (184), Expect = 8e-15
Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 82 ELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 141
E+AARLLF WA+ + F EL DQV LLR WS++F++N Q +MP +AP+++
Sbjct: 173 EMAARLLFMTAHWAKKVKHFSELSHFDQVTLLRENWSKVFIINLVQWAMPFEIAPIVSDI 232
Query: 142 GLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
D+V+ M + E V KL L + AE+S LKA+ LF
Sbjct: 233 VEKTPGQHLDKVLHTMGKL---NEVVFKLVQLQLSRAEFSLLKALALF 277
>SB_5770| Best HMM Match : Hormone_recep (HMM E-Value=3.4e-22)
Length = 282
Score = 75.8 bits (178), Expect = 4e-14
Identities = 56/150 (37%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Query: 49 SYISLLLRAEPYPASRYSPCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTD 108
S +S + + P + S C++ +ICE + L VEWA+++P F EL + D
Sbjct: 25 SLLSAEILSRPASSPPESICLEKE--ANYSDICESMRQQLLILVEWAKHLPCFCELPLDD 82
Query: 109 QVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVE 168
QVALLR SE VL S+ S+ L LL L A D V + RI E V
Sbjct: 83 QVALLRAHASEHLVLGVSRRSLNLKDI-LLLGNDLVIPRQAGDTEVRKI-ATRILDEIVL 140
Query: 169 KLKALHVDSAEYSCLKAIVLFTTGKILDSL 198
++ L++D EYSCLKAIV F G L +L
Sbjct: 141 PMRQLNIDDVEYSCLKAIVFFNPGLFLWAL 170
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 69.3 bits (162), Expect = 4e-12
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 11/132 (8%)
Query: 59 PYPASRYSPCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWS 118
PYP+S +Q + V +C + L S ++W+R +P F L V +Q ++LR W
Sbjct: 132 PYPSSG----LQSSPVSMYHRVCSI----LVSTLDWSRRVPMFANLDVCEQYSVLRSRWC 183
Query: 119 ELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSA 178
E+ +++A+Q + + PL ++ ++ + +R FQE V +L+ L + A
Sbjct: 184 EMLIVSAAQYEVHIDGIPLAYEVEMNPG-FCNEKQIQLKRSLRNFQESVWRLRGL--EEA 240
Query: 179 EYSCLKAIVLFT 190
EY+CLK I+LF+
Sbjct: 241 EYACLKTIILFS 252
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 62.9 bits (146), Expect = 3e-10
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 67 PCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNAS 126
P + V +D + E A RLLF +++W ++I F L DQ+ALL W+++F+L +
Sbjct: 260 PSLAGVQVFSMDYVYEFATRLLFVSIDWTQSISAFRALHKCDQIALLCKTWADIFLLGVA 319
Query: 127 QCSMPLHVAPL--LAAAGLHAS----PMAADRVVA---FMDHIRIFQEQVEKLKALHVDS 177
Q ++PL LAA + S P + + I ++ + + L++D+
Sbjct: 320 QSISNFPLSPLLSLAAKDIQQSEAQDPKPPKNIPGQKNTFEKIIAIKDVMFSFEKLNLDA 379
Query: 178 AEYSCLKAIVLFTT 191
E++ LKA+VLF +
Sbjct: 380 TEFAYLKAVVLFNS 393
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 54.8 bits (126), Expect = 9e-08
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 74 VMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 133
V+ +D + E A R+L+ V+W RNIP F +L DQ L+ WSELFVL + +
Sbjct: 145 VVYMDMMYESAIRVLYMTVKWVRNIPTFLDLPFRDQAILIEESWSELFVLRTASVDQTEY 204
Query: 134 VAPLLAAAGLHASPMAADRV-VAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 191
L A L D+ A + I +F+ +++ EY+CLKA VL T
Sbjct: 205 AC--LKAIVLFKPGRYLDQTEYACLKAIVLFK------PGRYLNQTEYACLKAQVLSLT 255
Score = 37.1 bits (82), Expect = 0.019
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 170 LKALHVDSAEYSCLKAIVLFTTGKILD 196
L+ VD EY+CLKAIVLF G+ LD
Sbjct: 194 LRTASVDQTEYACLKAIVLFKPGRYLD 220
Score = 34.7 bits (76), Expect = 0.099
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 174 HVDSAEYSCLKAIVLFTTGKILDS-----LFGEARLLLYRVAGAGVAVTNY 219
++D EY+CLKAIVLF G+ L+ L + L Y V GV +N+
Sbjct: 218 YLDQTEYACLKAIVLFKPGRYLNQTEYACLKAQVLSLTYGVFVCGVTWSNF 268
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 50.4 bits (115), Expect = 2e-06
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 77 IDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 136
++ I EL + + + WA+ +P F ++ DQ++LL E+ +L Q S P H
Sbjct: 163 VEAIMELTLQEVEHVINWAKRVPGFCDVDKEDQISLLSEGLLEVLILRICQRSTP-HQGA 221
Query: 137 LLAAAGLHASPMAADRVV--AFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
++ A SP +V + + F KL++L +D AE++C+ AI+LF
Sbjct: 222 VMVAKDTLLSPDNVFNIVLEQWAGQLSCF---AYKLQSLQLDMAEFACVNAIMLF 273
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 139 AAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
AA G+H A+++VA M IR QE + +AL V AE++CLKAIVLF
Sbjct: 179 AAPGMHVDNTPAEKIVATMADIRKLQEIGSRFRALQVCEAEFACLKAIVLF 229
>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
Length = 259
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 78 DNICELAARLLFSAVEWARNIPFFPELQVTDQ 109
+++CE AA+LLF +V+WARNIP F L DQ
Sbjct: 188 ESVCEAAAKLLFMSVKWARNIPSFMSLPFRDQ 219
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 151
V+WA+ +P F +L DQ+ LL EL V S+PL + +
Sbjct: 177 VDWAKLVPGFKDLCQEDQITLLTAAGMELVVFRVIFRSIPLPNYIYMTTTTCLQREGCYE 236
Query: 152 RVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 188
+ + + + + V++L+++ +D+ E++CL AI+L
Sbjct: 237 --ILNKEIVDMLLDVVDRLRSVGLDTVEFACLMAILL 271
>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 553
Score = 31.9 bits (69), Expect = 0.70
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Query: 79 NICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 138
++ +LA + L W +++ + DQ L+ VW EL + N + S L L
Sbjct: 361 HLTQLAEQQLVRCASWFKHLKLLKGICELDQQTLVTNVWVELMLANLIKESENLENKAKL 420
Query: 139 AAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 188
+ A + D ++ + K + ++ E C+K I+L
Sbjct: 421 CDGQILDFETA--EITGIGDILQRVVQMAAKFREFQLEKVEIVCMKMIIL 468
>SB_15097| Best HMM Match : p450 (HMM E-Value=0)
Length = 1310
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 101 FPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGL 143
FP+ T + ++ V + F ++ C+ L+V PLL A L
Sbjct: 400 FPQTLATKGIVIIERVVTSRFAVDMGLCNNSLYVPPLLQATSL 442
>SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.3 bits (60), Expect = 8.6
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 137 LLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKILD 196
LL G+ + D + D I+ E + L A V + C K ++L+T +
Sbjct: 418 LLEPEGISTFRVEQDLMRTLADVHFIYAEVCQTLNA--VSAVVRQCSKLVILYTLSNWIS 475
Query: 197 SLFGEARLLLYRVAGAGVAVTNYTELITLVRTHLDVYTD 235
SL EA R A GV + N LI +L YT+
Sbjct: 476 SLSQEAISSFQRAAEIGVEL-NEPWLICNSAVYLWNYTN 513
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,952,942
Number of Sequences: 59808
Number of extensions: 328723
Number of successful extensions: 679
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 20
length of query: 314
length of database: 16,821,457
effective HSP length: 82
effective length of query: 232
effective length of database: 11,917,201
effective search space: 2764790632
effective search space used: 2764790632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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