GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001391-TA|BGIBMGA001391-PA|IPR000536|Nuclear hormone
receptor, ligand-binding, IPR008946|Nuclear receptor, ligand-binding,
IPR013629|Zinc finger, C4-type, C-terminal
         (314 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280612-1|AAQ21365.1|  309|Anopheles gambiae carbonic anhydrase...    26   1.2  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   3.6  
AJ010194-1|CAA09033.1|  684|Anopheles gambiae prophenoloxidase p...    23   8.4  

>AY280612-1|AAQ21365.1|  309|Anopheles gambiae carbonic anhydrase
           protein.
          Length = 309

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 142 GLHASPMAADRVV--AFMDHIRIFQEQVEKLKALH 174
           G   +P  A+ V+   F + I +  EQVE+ KA+H
Sbjct: 214 GSLTTPACAESVIWTVFTESISVSLEQVERFKAIH 248


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 167  VEKLKALHVDSAEYSCLKAIVLFTTGKILDSLFGEARLL 205
            +E+LKALH D+     L+ I L      LD+LF    LL
Sbjct: 3295 MERLKALHTDA-----LEEIELHGANLALDNLFQRENLL 3328


>AJ010194-1|CAA09033.1|  684|Anopheles gambiae prophenoloxidase
           protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 281 LPSNYTSSPRVPE 293
           +PSNYT+S RV E
Sbjct: 181 IPSNYTASDRVDE 193


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,880
Number of Sequences: 2123
Number of extensions: 9853
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 314
length of database: 516,269
effective HSP length: 64
effective length of query: 250
effective length of database: 380,397
effective search space: 95099250
effective search space used: 95099250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)