Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001391-TA|BGIBMGA001391-PA|IPR000536|Nuclear hormone
receptor, ligand-binding, IPR008946|Nuclear receptor, ligand-binding,
IPR013629|Zinc finger, C4-type, C-terminal
(314 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical pr... 51 1e-06
AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear recep... 51 1e-06
Z75542-4|CAA99861.1| 424|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U97551-2|AAP13776.1| 434|Caenorhabditis elegans Nuclear hormone... 42 8e-04
U97551-1|AAP13775.1| 435|Caenorhabditis elegans Nuclear hormone... 42 8e-04
AF083229-1|AAD03687.1| 288|Caenorhabditis elegans nuclear recep... 42 8e-04
AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear recep... 41 0.001
AY204173-1|AAO39177.1| 369|Caenorhabditis elegans nuclear recep... 41 0.001
AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormo... 41 0.001
AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormo... 41 0.001
AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormo... 39 0.004
U41559-10|AAC24264.2| 371|Caenorhabditis elegans Hypothetical p... 39 0.005
U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormon... 39 0.005
U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone... 39 0.005
AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear recep... 39 0.005
AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear recep... 39 0.005
AY204172-1|AAO39176.1| 234|Caenorhabditis elegans nuclear recep... 38 0.007
AY349018-1|AAQ55498.1| 310|Caenorhabditis elegans NHR-91B protein. 37 0.021
AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein. 37 0.021
AL132841-5|CAI46629.1| 310|Caenorhabditis elegans Hypothetical ... 37 0.021
AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical ... 37 0.021
AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear recep... 37 0.021
AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear recep... 37 0.021
AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear recep... 37 0.021
U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone... 36 0.028
AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear recep... 36 0.049
Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 33 0.20
AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta p... 33 0.20
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 33 0.20
Z75955-9|CAB00122.1| 410|Caenorhabditis elegans Hypothetical pr... 33 0.26
U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.35
Z75955-10|CAB00123.1| 406|Caenorhabditis elegans Hypothetical p... 31 1.1
Z73103-7|CAA97428.1| 416|Caenorhabditis elegans Hypothetical pr... 30 1.9
AY204176-1|AAO39180.1| 409|Caenorhabditis elegans nuclear recep... 30 1.9
U41536-4|AAK39238.2| 419|Caenorhabditis elegans Defective fasci... 29 3.2
AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear recep... 29 3.2
AF176087-1|AAD55066.1| 419|Caenorhabditis elegans nuclear hormo... 29 3.2
AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormo... 29 3.2
AY305834-1|AAR11979.1| 327|Caenorhabditis elegans nuclear recep... 29 4.3
AF083228-1|AAD03686.1| 415|Caenorhabditis elegans nuclear recep... 29 4.3
AF016443-3|AAC24281.1| 395|Caenorhabditis elegans Hypothetical ... 29 4.3
AC006810-4|AAT68890.1| 425|Caenorhabditis elegans Nuclear hormo... 29 4.3
AC006810-3|AAF59634.2| 414|Caenorhabditis elegans Nuclear hormo... 29 4.3
U97003-6|AAB52273.1| 402|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z93389-3|CAB07671.2| 355|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z78064-5|CAB01507.1| 235|Caenorhabditis elegans Hypothetical pr... 28 9.9
U97003-4|AAB52268.2| 370|Caenorhabditis elegans Hypothetical pr... 28 9.9
U55365-8|AAA98573.2| 383|Caenorhabditis elegans Hypothetical pr... 28 9.9
AL132862-15|CAB60549.1| 703|Caenorhabditis elegans Hypothetical... 28 9.9
AF078157-6|AAQ62458.1| 406|Caenorhabditis elegans Hypothetical ... 28 9.9
>Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical
protein T23H4.2 protein.
Length = 373
Score = 50.8 bits (116), Expect = 1e-06
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Query: 48 SSYISLLLRAEPYPASRYSPCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVT 107
SS I PY + + +D+I + + L +EWA+++P F L
Sbjct: 113 SSVIKNTSSLAPYDCGKVKWNYEDARAATLDDIGKSIHQQLVLFIEWAKSLPQFSFLAQA 172
Query: 108 DQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHI--RIFQE 165
DQ ALL+ + + VL + S+ L V + A P V ++ + RI E
Sbjct: 173 DQAALLKGGAASIIVLGVAYRSICLTVENTICLANDTLLPKEHATQVGDINCVVGRIIDE 232
Query: 166 QVEKLKALHVDSAEYSCLKAIVLF 189
V ++ L++D EY LKAI+ F
Sbjct: 233 IVNPMRRLNMDLIEYVALKAILFF 256
>AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear receptor
NHR-69 protein.
Length = 373
Score = 50.8 bits (116), Expect = 1e-06
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Query: 48 SSYISLLLRAEPYPASRYSPCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVT 107
SS I PY + + +D+I + + L +EWA+++P F L
Sbjct: 113 SSVIKNTSSLAPYDCGKVKWNYEDARAATLDDIGKSIHQQLVLFIEWAKSLPQFSFLAQA 172
Query: 108 DQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHI--RIFQE 165
DQ ALL+ + + VL + S+ L V + A P V ++ + RI E
Sbjct: 173 DQAALLKGGAASIIVLGVAYRSICLTVENTICLANDTLLPKEHATQVGDINCVVGRIIDE 232
Query: 166 QVEKLKALHVDSAEYSCLKAIVLF 189
V ++ L++D EY LKAI+ F
Sbjct: 233 IVNPMRRLNMDLIEYVALKAILFF 256
>Z75542-4|CAA99861.1| 424|Caenorhabditis elegans Hypothetical
protein F55D12.4 protein.
Length = 424
Score = 46.4 bits (105), Expect = 3e-05
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 20/133 (15%)
Query: 78 DNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 137
++I E AA+ +F+ V WAR L DQ+ LLR W+ +F+ +Q + L+++
Sbjct: 181 ESIFEFAAQTIFATVNWARTS--MSNLVKGDQLILLRHSWTPIFIFALAQSNFALNLSTH 238
Query: 138 LAAAGLHAS----------------PMAADRVVAFMDHIRI--FQEQVEKLKALHVDSAE 179
L A A+ + ++ D + FQ +++K++ H+D E
Sbjct: 239 LTAVTATAASTENGSSSLGSKSEDEEKSEEKPERVFDEPQFQGFQAKIDKIRDFHLDVVE 298
Query: 180 YSCLKAIVLFTTG 192
S L+A++LF+ G
Sbjct: 299 SSSLRAVLLFSCG 311
>U97551-2|AAP13776.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 14, isoform b protein.
Length = 434
Score = 41.5 bits (93), Expect = 8e-04
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 151
+ W + PE+ + D+V LL+ S +L Q SM L L L S A+
Sbjct: 174 IGWTNMLHPLPEVPLADKVLLLKKFSSAFTLLGTLQRSMALPHFVLPNDQVLSIS--ASH 231
Query: 152 RVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 188
F RI E + L+ L D AE+SCLKA++L
Sbjct: 232 PPELFEALTRIIDELLTPLRRLRTDHAEFSCLKALLL 268
>U97551-1|AAP13775.1| 435|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 14, isoform a protein.
Length = 435
Score = 41.5 bits (93), Expect = 8e-04
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 151
+ W + PE+ + D+V LL+ S +L Q SM L L L S A+
Sbjct: 174 IGWTNMLHPLPEVPLADKVLLLKKFSSAFTLLGTLQRSMALPHFVLPNDQVLSIS--ASH 231
Query: 152 RVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 188
F RI E + L+ L D AE+SCLKA++L
Sbjct: 232 PPELFEALTRIIDELLTPLRRLRTDHAEFSCLKALLL 268
>AF083229-1|AAD03687.1| 288|Caenorhabditis elegans nuclear receptor
NHR-14 protein.
Length = 288
Score = 41.5 bits (93), Expect = 8e-04
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 151
+ W + PE+ + D+V LL+ S +L Q SM L L L S A+
Sbjct: 27 IGWTNMLHPLPEVPLADKVLLLKKFSSAFTLLGTLQRSMALPHFVLPNDQVLSIS--ASH 84
Query: 152 RVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 188
F RI E + L+ L D AE+SCLKA++L
Sbjct: 85 PPELFEALTRIIDELLTPLRRLRTDHAEFSCLKALLL 121
>AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 344
Score = 40.7 bits (91), Expect = 0.001
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 32 LGNGDPGAGLNNHPYLSSYISLLLRAEPYPASRYSPCVQPTNVMGIDNICELAARLLFSA 91
L NG G + + P L + I + + + +++ + + L
Sbjct: 85 LSNGSNGGIVPDDPLLDTLIRAEASTRGLRTTVITKTAEARKQATTNDVTDSMNQQLTLM 144
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA-AAGLHA-SPMA 149
VEWA+ + F + QVALLR ++ V+ A+ S+ L A L LH SP
Sbjct: 145 VEWAKVLEGFQRVDNITQVALLRHFSAQHLVMCAAFRSIHLSDAVWLTNETCLHKDSPKI 204
Query: 150 ADRVVAFMDHI--RIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
D M+ + RI + +++LH++ EY LKAI F
Sbjct: 205 PD-----MNRVAERIIDQVTNPMRSLHMNEIEYIALKAIAFF 241
>AY204173-1|AAO39177.1| 369|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 369
Score = 40.7 bits (91), Expect = 0.001
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 32 LGNGDPGAGLNNHPYLSSYISLLLRAEPYPASRYSPCVQPTNVMGIDNICELAARLLFSA 91
L NG G + + P L + I + + + +++ + + L
Sbjct: 110 LSNGSNGGIVPDDPLLDTLIRAEASTRGLRTTVITKTAEARKQATTNDVTDSMNQQLTLM 169
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA-AAGLHA-SPMA 149
VEWA+ + F + QVALLR ++ V+ A+ S+ L A L LH SP
Sbjct: 170 VEWAKVLEGFQRVDNITQVALLRHFSAQHLVMCAAFRSIHLSDAVWLTNETCLHKDSPKI 229
Query: 150 ADRVVAFMDHI--RIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
D M+ + RI + +++LH++ EY LKAI F
Sbjct: 230 PD-----MNRVAERIIDQVTNPMRSLHMNEIEYIALKAIAFF 266
>AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform b protein.
Length = 387
Score = 40.7 bits (91), Expect = 0.001
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 32 LGNGDPGAGLNNHPYLSSYISLLLRAEPYPASRYSPCVQPTNVMGIDNICELAARLLFSA 91
L NG G + + P L + I + + + +++ + + L
Sbjct: 128 LSNGSNGGIVPDDPLLDTLIRAEASTRGLRTTVITKTAEARKQATTNDVTDSMNQQLTLM 187
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA-AAGLHA-SPMA 149
VEWA+ + F + QVALLR ++ V+ A+ S+ L A L LH SP
Sbjct: 188 VEWAKVLEGFQRVDNITQVALLRHFSAQHLVMCAAFRSIHLSDAVWLTNETCLHKDSPKI 247
Query: 150 ADRVVAFMDHI--RIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
D M+ + RI + +++LH++ EY LKAI F
Sbjct: 248 PD-----MNRVAERIIDQVTNPMRSLHMNEIEYIALKAIAFF 284
>AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform a protein.
Length = 412
Score = 40.7 bits (91), Expect = 0.001
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 32 LGNGDPGAGLNNHPYLSSYISLLLRAEPYPASRYSPCVQPTNVMGIDNICELAARLLFSA 91
L NG G + + P L + I + + + +++ + + L
Sbjct: 153 LSNGSNGGIVPDDPLLDTLIRAEASTRGLRTTVITKTAEARKQATTNDVTDSMNQQLTLM 212
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA-AAGLHA-SPMA 149
VEWA+ + F + QVALLR ++ V+ A+ S+ L A L LH SP
Sbjct: 213 VEWAKVLEGFQRVDNITQVALLRHFSAQHLVMCAAFRSIHLSDAVWLTNETCLHKDSPKI 272
Query: 150 ADRVVAFMDHI--RIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
D M+ + RI + +++LH++ EY LKAI F
Sbjct: 273 PD-----MNRVAERIIDQVTNPMRSLHMNEIEYIALKAIAFF 309
>AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 166 protein.
Length = 363
Score = 39.1 bits (87), Expect = 0.004
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 91 AVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 150
AVE +++ F+P+L ++D++ LL V + F L+ + S +LA G P +
Sbjct: 172 AVETIKSLDFYPKLLLSDRILLLETVTLKSFHLSVAFDSFSQKKEKILAPDGSEMFPDSL 231
Query: 151 DRVVAFMDHI-RIFQEQVEKLKALHVDSAEYSCLKAIVL 188
+++ D I R+ V+ L A+ + EY L IV+
Sbjct: 232 NKMDFCKDLIMRLLTTPVKPLIAMKLTETEYLLLGIIVI 270
>U41559-10|AAC24264.2| 371|Caenorhabditis elegans Hypothetical
protein C26B2.4 protein.
Length = 371
Score = 38.7 bits (86), Expect = 0.005
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 47 LSSYISLLLRAEPYPASRYSPCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQV 106
LSS + L++ R+ +P ++ ++N C +R + +++A P F +L
Sbjct: 153 LSSTVHELIQKTSPQCPRFKRDWKPLEMLNLENFCRSWSRSIVHFLDFATRFPVFNQLSH 212
Query: 107 TDQVA--LLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF-MDHIR-- 161
D+ A + RL F+ A Q + + L + + P+ +DR +A +H+R
Sbjct: 213 IDKRAWFISRLAPCS-FLTMAYQTRIEMCEGLLFGCSNVF--PLKSDRWIAVETEHLRGL 269
Query: 162 -------IFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKILDSL 198
+F + + L + YS LKA V F+ G ++ S+
Sbjct: 270 FSSITETMFSFVIYPMMNLKITDLHYSLLKACVFFSAGIVVTSV 313
>U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform b protein.
Length = 486
Score = 38.7 bits (86), Expect = 0.005
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 88 LFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVA-----PLLAAAG 142
L +EWA+ +P F +L DQ LL+ + L + S+ + A L
Sbjct: 189 LLLVIEWAKTLPEFKQLSGADQAVLLKNFAGQHVTLCVAYRSVGANDALKLLNDLYIPRA 248
Query: 143 LHASPMAADRVVAF--MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
+P + V F D ++ + VE ++ L +D+ E+ LKA VLF
Sbjct: 249 SKTTPHLKEYVDGFYLRDCEKVMDQLVEPMRFLKLDNKEFVALKACVLF 297
>U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform a protein.
Length = 542
Score = 38.7 bits (86), Expect = 0.005
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 88 LFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVA-----PLLAAAG 142
L +EWA+ +P F +L DQ LL+ + L + S+ + A L
Sbjct: 245 LLLVIEWAKTLPEFKQLSGADQAVLLKNFAGQHVTLCVAYRSVGANDALKLLNDLYIPRA 304
Query: 143 LHASPMAADRVVAF--MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
+P + V F D ++ + VE ++ L +D+ E+ LKA VLF
Sbjct: 305 SKTTPHLKEYVDGFYLRDCEKVMDQLVEPMRFLKLDNKEFVALKACVLF 353
>AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 487
Score = 38.7 bits (86), Expect = 0.005
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 88 LFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVA-----PLLAAAG 142
L +EWA+ +P F +L DQ LL+ + L + S+ + A L
Sbjct: 190 LLLVIEWAKTLPEFKQLSGADQAVLLKNFAGQHVTLCVAYRSVGANDALKLLNDLYIPRA 249
Query: 143 LHASPMAADRVVAF--MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
+P + V F D ++ + VE ++ L +D+ E+ LKA VLF
Sbjct: 250 SKTTPHLKEYVDGFYLRDCEKVMDQLVEPMRFLKLDNKEFVALKACVLF 298
>AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 508
Score = 38.7 bits (86), Expect = 0.005
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 88 LFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVA-----PLLAAAG 142
L +EWA+ +P F +L DQ LL+ + L + S+ + A L
Sbjct: 211 LLLVIEWAKTLPEFKQLSGADQAVLLKNFAGQHVTLCVAYRSVGANDALKLLNDLYIPRA 270
Query: 143 LHASPMAADRVVAF--MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
+P + V F D ++ + VE ++ L +D+ E+ LKA VLF
Sbjct: 271 SKTTPHLKEYVDGFYLRDCEKVMDQLVEPMRFLKLDNKEFVALKACVLF 319
>AY204172-1|AAO39176.1| 234|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 234
Score = 38.3 bits (85), Expect = 0.007
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA-AAGLHA-SPMA 149
VEWA+ + F + QVALLR ++ V+ A+ S+ L A L LH SP
Sbjct: 35 VEWAKVLEGFQRVDNITQVALLRHFSAQHLVMCAAFRSIHLSDAVWLTNETCLHKDSPKI 94
Query: 150 ADRVVAFMDHI--RIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
D M+ + RI + +++LH++ EY LKAI F
Sbjct: 95 PD-----MNRVAERIIDQVTNPMRSLHMNEIEYIALKAIAFF 131
>AY349018-1|AAQ55498.1| 310|Caenorhabditis elegans NHR-91B protein.
Length = 310
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNA 125
VEW + +PFF EL V LL W+EL +L+A
Sbjct: 103 VEWTKTLPFFDELPVEAHTHLLTQRWAELVLLSA 136
>AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein.
Length = 474
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNA 125
VEW + +PFF EL V LL W+EL +L+A
Sbjct: 267 VEWTKTLPFFDELPVEAHTHLLTQRWAELVLLSA 300
>AL132841-5|CAI46629.1| 310|Caenorhabditis elegans Hypothetical
protein Y15E3A.1b protein.
Length = 310
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNA 125
VEW + +PFF EL V LL W+EL +L+A
Sbjct: 103 VEWTKTLPFFDELPVEAHTHLLTQRWAELVLLSA 136
>AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical
protein Y15E3A.1a protein.
Length = 474
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNA 125
VEW + +PFF EL V LL W+EL +L+A
Sbjct: 267 VEWTKTLPFFDELPVEAHTHLLTQRWAELVLLSA 300
>AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 476
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNA 125
VEW + +PFF EL V LL W+EL +L+A
Sbjct: 269 VEWTKTLPFFDELPVEAHTHLLTQRWAELVLLSA 302
>AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNA 125
VEW + +PFF EL V LL W+EL +L+A
Sbjct: 268 VEWTKTLPFFDELPVEAHTHLLTQRWAELVLLSA 301
>AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNA 125
VEW + +PFF EL V LL W+EL +L+A
Sbjct: 268 VEWTKTLPFFDELPVEAHTHLLTQRWAELVLLSA 301
>U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 10 protein.
Length = 395
Score = 36.3 bits (80), Expect = 0.028
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 89 FSAVEWARNIPFFPELQVTDQVALLR---LVWSEL-FVLNASQCSMPLHVAPLLAAAGLH 144
F +EWA+ +P F L TD++ALLR + + L V N+ + V P A
Sbjct: 204 FVMIEWAKTLPVFQSLPFTDKLALLRHSAITYPSLVHVFNSPDHGLDTIVFP--DGAYFD 261
Query: 145 ASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAI 186
+P + ++ + ++ ++++ +D E++ KAI
Sbjct: 262 RTPEPTRPLGFNKKKYQMLDQLLKPMRSMEIDMTEFAAFKAI 303
>AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear receptor
NHR-10 protein.
Length = 395
Score = 35.5 bits (78), Expect = 0.049
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 89 FSAVEWARNIPFFPELQVTDQVALLR---LVWSEL-FVLNASQCSMPLHVAPLLAAAGLH 144
F +EWA+ +P F L TD++ALLR + + L V N + V P A
Sbjct: 204 FVMIEWAKTLPVFQSLPFTDKLALLRHSAITYPSLVHVFNPPDHGLDTIVFP--DGAYFD 261
Query: 145 ASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAI 186
+P + ++ + ++ ++++ +D E++ KAI
Sbjct: 262 RTPEPTRPLGFNKKKYQMLDQLLKPMRSMEIDMTEFAAFKAI 303
>Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical
protein F11C1.6b protein.
Length = 492
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/108 (17%), Positives = 49/108 (45%)
Query: 82 ELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 141
++A L V WA+N F +L + DQ+ LL+ W+ + +++ + + ++ +
Sbjct: 274 QVAEENLKDIVIWAKNDQLFSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMS 333
Query: 142 GLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
P+ ++ + + + V +L+ + + +Y + + LF
Sbjct: 334 NGDEVPVGLVALLGNQTFVSSWNDVVIRLRNMGFTNFDYCAFRFLALF 381
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/108 (17%), Positives = 49/108 (45%)
Query: 82 ELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 141
++A L V WA+N F +L + DQ+ LL+ W+ + +++ + + ++ +
Sbjct: 354 QVAEENLKDIVIWAKNDQLFSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMS 413
Query: 142 GLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
P+ ++ + + + V +L+ + + +Y + + LF
Sbjct: 414 NGDEVPVGLVALLGNQTFVSSWNDVVIRLRNMGFTNFDYCAFRFLALF 461
>AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta
protein.
Length = 492
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/108 (17%), Positives = 49/108 (45%)
Query: 82 ELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 141
++A L V WA+N F +L + DQ+ LL+ W+ + +++ + + ++ +
Sbjct: 274 QVAEENLKDIVIWAKNDQLFSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMS 333
Query: 142 GLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
P+ ++ + + + V +L+ + + +Y + + LF
Sbjct: 334 NGDEVPVGLVALLGNQTFVSSWNDVVIRLRNMGFTNFDYCAFRFLALF 381
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/108 (17%), Positives = 49/108 (45%)
Query: 82 ELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 141
++A L V WA+N F +L + DQ+ LL+ W+ + +++ + + ++ +
Sbjct: 350 QVAEENLKDIVIWAKNDQLFSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMS 409
Query: 142 GLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
P+ ++ + + + V +L+ + + +Y + + LF
Sbjct: 410 NGDEVPVGLVALLGNQTFVSSWNDVVIRLRNMGFTNFDYCAFRFLALF 457
>Z75955-9|CAB00122.1| 410|Caenorhabditis elegans Hypothetical
protein R07B7.13 protein.
Length = 410
Score = 33.1 bits (72), Expect = 0.26
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA-GLHASPMAA 150
VE+A+ + FFP++ + L++ L+ S+ S+ + + +L G A
Sbjct: 224 VEYAKMLDFFPKISKETAIKLVKHGLFMCGSLSFSRRSIQKYNSDILRFTDGSVAGKPKT 283
Query: 151 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 188
+ +DH RI Q+ + + + +D EY LKAI +
Sbjct: 284 NWNGVMLDHRRIAQKTLHSILRVKLDYVEYLFLKAITM 321
>U50308-8|AAG24032.1| 562|Caenorhabditis elegans Hypothetical
protein F07C3.10 protein.
Length = 562
Score = 32.7 bits (71), Expect = 0.35
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 88 LFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHAS- 146
+ +A+E+A+ PFF +L+ D++ L + L ++ S +A L G+ S
Sbjct: 244 MLTAIEYAKTFPFFQQLESNDKILLTKATTFMNLALTSNYSSFLSKMAVLQMPDGICISG 303
Query: 147 PMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 188
P+ R+ + L D EY LKAI+L
Sbjct: 304 PVGQGEHEIRSFERRLSLRIMAPLIRNLFDRTEYVLLKAIIL 345
>Z75955-10|CAB00123.1| 406|Caenorhabditis elegans Hypothetical
protein R07B7.14 protein.
Length = 406
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 83 LAARLLFSAVEWARNIPFFPELQVTDQVALLRL-VWSELFVLNASQCSMPLHVAPLLAAA 141
LA + VE+A+ + FFP+L Q+ ++R ++N + H + A
Sbjct: 211 LAHNSFLAVVEFAKFLDFFPKLDSETQLKVVRHGALMVRGMMNTERSIRKFHSDCVRRAD 270
Query: 142 GLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 188
G A + +++ +I Q+ + +D EY LK IVL
Sbjct: 271 GSIAGKPMRNYNGIWVEQRKIVQKGLHAFLRNKIDETEYLLLKGIVL 317
>Z73103-7|CAA97428.1| 416|Caenorhabditis elegans Hypothetical
protein C08F8.8 protein.
Length = 416
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 59 PYPASRYSPCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWS 118
P S + PT+ M D + AAR+ F+ V + +N P + Q+ + + W+
Sbjct: 123 PEMGSESDAIILPTSSMNRDTVAGTAARIFFALVGFCQN-P-LNGVPKERQMTMFQQNWA 180
Query: 119 ELFVLNASQ 127
L VL+A++
Sbjct: 181 ALLVLHATE 189
>AY204176-1|AAO39180.1| 409|Caenorhabditis elegans nuclear receptor
NHR-67 protein.
Length = 409
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 59 PYPASRYSPCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWS 118
P S + PT+ M D + AAR+ F+ V + +N P + Q+ + + W+
Sbjct: 116 PEMGSESDAIILPTSSMNRDTVAGTAARIFFALVGFCQN-P-LNGVPKERQMTMFQQNWA 173
Query: 119 ELFVLNASQ 127
L VL+A++
Sbjct: 174 ALLVLHATE 182
>U41536-4|AAK39238.2| 419|Caenorhabditis elegans Defective
fasciculation of axonsprotein 1 protein.
Length = 419
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 154 VAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
V+F DH+ + K + L V AE++CLKAI +F
Sbjct: 288 VSFDDHLTSL---MLKFRRLDVSPAEFNCLKAITIF 320
>AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear receptor
NHR-124 protein.
Length = 376
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 91 AVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 150
AVE + + F+ +L ++D+V LL+ V + L+ + S +LA G P
Sbjct: 187 AVEVCKGLSFYNDLLLSDRVLLLKNVAFKSHHLSVAYDSFIQKKGRVLAPTGTEMFPDVL 246
Query: 151 DRVVAFMDHIR-IFQEQVEKLKALHVDSAEYSCLKAIVL 188
+ + I + ++ L L + +EY L IV+
Sbjct: 247 FEIPKCREIIMDLLTSPMKPLMELQITESEYLLLNMIVI 285
>AF176087-1|AAD55066.1| 419|Caenorhabditis elegans nuclear hormone
receptor FAX-1 protein.
Length = 419
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 154 VAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 189
V+F DH+ + K + L V AE++CLKAI +F
Sbjct: 288 VSFDDHLTSL---MLKFRRLDVSPAEFNCLKAITIF 320
>AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 124 protein.
Length = 376
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 91 AVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 150
AVE + + F+ +L ++D+V LL+ V + L+ + S +LA G P
Sbjct: 187 AVEVCKGLSFYNDLLLSDRVLLLKNVAFKSHHLSVAYDSFIQKKGRVLAPTGTEMFPDVL 246
Query: 151 DRVVAFMDHIR-IFQEQVEKLKALHVDSAEYSCLKAIVL 188
+ + I + ++ L L + +EY L IV+
Sbjct: 247 FEIPKCREIIMDLLTSPMKPLMELQITESEYLLLNMIVI 285
>AY305834-1|AAR11979.1| 327|Caenorhabditis elegans nuclear receptor
NHR-13 protein.
Length = 327
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNAS 126
+++AR +P F E+ D V RLV + FV+N++
Sbjct: 125 MDYARGMPGFDEMNYADSVFCYRLVCAVDFVINSA 159
>AF083228-1|AAD03686.1| 415|Caenorhabditis elegans nuclear receptor
NHR-13 protein.
Length = 415
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNAS 126
+++AR +P F E+ D V RLV + FV+N++
Sbjct: 213 MDYARGMPGFDEMNYADSVFCYRLVCAVDFVINSA 247
>AF016443-3|AAC24281.1| 395|Caenorhabditis elegans Hypothetical
protein C17E7.7 protein.
Length = 395
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 88 LFSAVEWARNIPFFPELQVTDQVALLR 114
L++ VE+ N+PF +LQ +++ LLR
Sbjct: 204 LYTTVEFLSNMPFMSKLQTAEKMCLLR 230
>AC006810-4|AAT68890.1| 425|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 13, isoform b protein.
Length = 425
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNAS 126
+++AR +P F E+ D V RLV + FV+N++
Sbjct: 212 MDYARGMPGFDEMNYADSVFCYRLVCAVDFVINSA 246
>AC006810-3|AAF59634.2| 414|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 13, isoform a protein.
Length = 414
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 92 VEWARNIPFFPELQVTDQVALLRLVWSELFVLNAS 126
+++AR +P F E+ D V RLV + FV+N++
Sbjct: 212 MDYARGMPGFDEMNYADSVFCYRLVCAVDFVINSA 246
>U97003-6|AAB52273.1| 402|Caenorhabditis elegans Hypothetical
protein F47C10.8 protein.
Length = 402
Score = 28.7 bits (61), Expect = 5.7
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 82 ELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 141
E + + ++ AVE ++ F ++ D++ LLR S+ L+++ S+ V ++
Sbjct: 209 EWSFQAIYIAVEMFLSLDFMNSIENDDKIVLLRNFSSKSMQLDSAMRSLNAKVDRVITPD 268
Query: 142 G--LHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKILDSLF 199
G +++ + A + F++ IR V +++ L V E++ L +LF I
Sbjct: 269 GNEVYSDLLLAMFSIDFLNSIR--SSLVVRVEELKVTEQEHALLN-FLLFCNPAIHPLSE 325
Query: 200 GEARLLLYRVAGAGVAVTNY 219
RLL R A+ Y
Sbjct: 326 RTRRLLATRQKSYSSALLQY 345
>Z93389-3|CAB07671.2| 355|Caenorhabditis elegans Hypothetical
protein T13F3.3 protein.
Length = 355
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 68 CVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVL 123
C++ + M +++ ++ +++ S W FF +L+ ++V +L +W VL
Sbjct: 155 CIKIIDEMDSESLKDVQFKVIGSCATWLLFSSFFQKLEENEKVVILERLWHGWTVL 210
>Z78064-5|CAB01507.1| 235|Caenorhabditis elegans Hypothetical
protein F57B1.7 protein.
Length = 235
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 267 SSLSYGSFLSTPSRLPSNYTSSPRVPEASTSSPFKPWDCKVP 308
+SL YGS ++P L S+ TSS +AS+ SP P+ +P
Sbjct: 40 NSLLYGSINTSPQPLLSSPTSS----DASSCSPSMPFTPSIP 77
>U97003-4|AAB52268.2| 370|Caenorhabditis elegans Hypothetical
protein F47C10.3 protein.
Length = 370
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 79 NICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 138
NI E + ++ +VE N+ F + D++ LLR + VLN++ ++ ++
Sbjct: 174 NIHEWSFLTIYVSVEMFLNLDFMQNIDNEDKIVLLREFSLKTLVLNSAMRAILNKTDRVM 233
Query: 139 AAAGLHASPMAADRVVA--FMDHIRIFQEQVEKLKALHVDSAEYSCLKAIV 187
G P ++ + F+++IR + + L V S E+ L I+
Sbjct: 234 TPDGKDVYPDRLLQMFSLDFLNNIR--SRLATRFRELKVSSEEHMLLNLIL 282
>U55365-8|AAA98573.2| 383|Caenorhabditis elegans Hypothetical
protein C12D5.2 protein.
Length = 383
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 88 LFSAVEWARNIPFFPELQVTDQVALLRLV 116
L +++E+ + PFF +L DQ+ L+R V
Sbjct: 200 LLTSIEFLKTFPFFLKLDTKDQLILMRHV 228
>AL132862-15|CAB60549.1| 703|Caenorhabditis elegans Hypothetical
protein Y73F8A.21 protein.
Length = 703
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 76 GIDNICELAARLLFSAVEWARNI-PFFPELQVTDQV 110
G D +C +A R L +A++W ++ P L D+V
Sbjct: 217 GNDELCAIAYRRLIAAIDWVESLSPLLGHLTPQDKV 252
>AF078157-6|AAQ62458.1| 406|Caenorhabditis elegans Hypothetical
protein F25E5.6b protein.
Length = 406
Score = 27.9 bits (59), Expect = 9.9
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 88 LFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASP 147
L ++E+A+ FF +L D++ L+R V S M LH++ A +
Sbjct: 224 LMVSIEYAKTFMFFHQLGTRDRLILMRYV---------SLALMNLHIS-YFTVAKKFDTI 273
Query: 148 MAADRVVAFMDHIRIFQEQVEKLKAL---HVDSAEYSCLKAIVL 188
+ D +A M+ ++ E V + L ++ EY LKAI L
Sbjct: 274 IHPDGSLAPMNKGMVYAETVMSMAPLIRCNIQEIEYILLKAICL 317
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,571,047
Number of Sequences: 27539
Number of extensions: 240306
Number of successful extensions: 817
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 57
length of query: 314
length of database: 12,573,161
effective HSP length: 81
effective length of query: 233
effective length of database: 10,342,502
effective search space: 2409802966
effective search space used: 2409802966
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -