GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001391-TA|BGIBMGA001391-PA|IPR000536|Nuclear hormone
receptor, ligand-binding, IPR008946|Nuclear receptor, ligand-binding,
IPR013629|Zinc finger, C4-type, C-terminal
         (314 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    71   2e-14
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    71   2e-14
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    40   2e-05
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   8.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.0  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 70.5 bits (165), Expect = 2e-14
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 1/136 (0%)

Query: 77  IDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 136
           + +IC    + LF  V WA++IP F  L + DQV LLR  W+EL + + S  S+ +    
Sbjct: 231 VSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDG- 289

Query: 137 LLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKILD 196
           ++ A G+     +A +        R+  E V K++ + +D  E  CL++I+LF       
Sbjct: 290 IVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGL 349

Query: 197 SLFGEARLLLYRVAGA 212
               E  LL  ++ GA
Sbjct: 350 KSIQEVTLLREKIYGA 365


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 70.5 bits (165), Expect = 2e-14
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 1/136 (0%)

Query: 77  IDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 136
           + +IC    + LF  V WA++IP F  L + DQV LLR  W+EL + + S  S+ +    
Sbjct: 231 VSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDG- 289

Query: 137 LLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKILD 196
           ++ A G+     +A +        R+  E V K++ + +D  E  CL++I+LF       
Sbjct: 290 IVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGL 349

Query: 197 SLFGEARLLLYRVAGA 212
               E  LL  ++ GA
Sbjct: 350 KSIQEVTLLREKIYGA 365


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 79  NICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 138
           +I E+    +   VE+++ +P F EL   DQ+ALL+   SE+ +L  ++    +    ++
Sbjct: 377 HITEITILTVQLIVEFSKRLPGFDELMREDQIALLKACSSEVMMLRMAR-KYDVQTDSII 435

Query: 139 AAAGLHASPMAAD--RVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFT 190
            A   +  P   D   V    + I        ++ A+ V++AEY+ L AIV+F+
Sbjct: 436 FA---NNQPYTKDSYTVAGMGETIEDLLHFCRQMYAMKVNNAEYALLTAIVIFS 486


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 92  VEWARNIPFFPELQVTDQVALLR 114
           VE+A+ IP F  L   DQV LL+
Sbjct: 250 VEFAKRIPGFSLLAQDDQVTLLK 272


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 176 DSAEYSCLKAIVLF 189
           ++ EYSCLK  +LF
Sbjct: 224 NTGEYSCLKVDLLF 237


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 176 DSAEYSCLKAIVLF 189
           ++ EYSCLK  +LF
Sbjct: 224 NTGEYSCLKVDLLF 237


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,346
Number of Sequences: 429
Number of extensions: 2980
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 314
length of database: 140,377
effective HSP length: 58
effective length of query: 256
effective length of database: 115,495
effective search space: 29566720
effective search space used: 29566720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)