GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001391-TA|BGIBMGA001391-PA|IPR000536|Nuclear hormone
receptor, ligand-binding, IPR008946|Nuclear receptor, ligand-binding,
IPR013629|Zinc finger, C4-type, C-terminal
         (314 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15760.1 68415.m01804 calmodulin-binding protein similar to A...    29   3.1  
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    29   4.0  
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei...    28   9.3  
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei...    28   9.3  

>At2g15760.1 68415.m01804 calmodulin-binding protein similar to
           AR781 GI:1669593 from [Arabidopsis thaliana]; AR781
           complements pheromone receptor deficient mutant of
           Shizosaccharomyces pombe
          Length = 315

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)

Query: 267 SSLSYGSFLSTPSRLPSNYTSSPRVPEASTSS--PFKPWDCKVPKT 310
           +S  Y +  S+P+R  +N+ S+P  P  STSS  PF  WD + P+T
Sbjct: 19  TSSPYITAPSSPTRFGNNFFSAPTSPSPSTSSNIPF-DWDDQ-PRT 62


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 150 ADRVVAFMDHIRIFQEQVEKLKALHVDSAE 179
           A  V+AFM+H R  ++ V KL+A  ++SAE
Sbjct: 407 AQSVIAFMNHSRQLKDVVYKLEARGMNSAE 436


>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 294

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 269 LSYGSFLSTPSRLPSNYTSSPRVPEASTSSPFKPWDCKVP 308
           LS  S  S   +LPS+ TS+ R   +S +S F P   +VP
Sbjct: 36  LSPRSITSHTLKLPSSSTSALRSISSSMASSFNPEQARVP 75


>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 369

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 269 LSYGSFLSTPSRLPSNYTSSPRVPEASTSSPFKPWDCKVP 308
           LS  S  S   +LPS+ TS+ R   +S +S F P   +VP
Sbjct: 36  LSPRSITSHTLKLPSSSTSALRSISSSMASSFNPEQARVP 75


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,339,221
Number of Sequences: 28952
Number of extensions: 231049
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 4
length of query: 314
length of database: 12,070,560
effective HSP length: 81
effective length of query: 233
effective length of database: 9,725,448
effective search space: 2266029384
effective search space used: 2266029384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)