Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001390-TA|BGIBMGA001390-PA|IPR001357|BRCT
(1178 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 42 0.002
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 42 0.003
At3g28790.1 68416.m03593 expressed protein 37 0.070
At1g07480.2 68414.m00801 transcription factor IIA large subunit ... 37 0.092
At1g07480.1 68414.m00800 transcription factor IIA large subunit ... 37 0.092
At4g19570.1 68417.m02877 DNAJ heat shock N-terminal domain-conta... 36 0.12
At5g27220.1 68418.m03247 protein transport protein-related low s... 34 0.65
At3g59370.1 68416.m06621 expressed protein hypothetical protein ... 34 0.65
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c... 33 0.86
At5g31685.1 68418.m03766 expressed protein ; expression supporte... 33 1.1
At5g28970.1 68418.m03584 Ulp1 protease family protein contains P... 33 1.5
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 33 1.5
At3g22380.1 68416.m02825 expressed protein 33 1.5
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 33 1.5
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 33 1.5
At2g40070.1 68415.m04923 expressed protein 33 1.5
At1g18840.1 68414.m02346 calmodulin-binding family protein low s... 33 1.5
At5g51670.1 68418.m06406 expressed protein contains Pfam domain ... 32 2.0
At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein ... 32 2.0
At4g31880.1 68417.m04531 expressed protein 32 2.0
At4g08630.1 68417.m01420 expressed protein ; expression supporte... 32 2.0
At1g02970.1 68414.m00267 protein kinase, putative similar to Wee... 32 2.0
At5g40450.1 68418.m04905 expressed protein 32 2.6
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 32 2.6
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 32 2.6
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 32 2.6
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 31 3.5
At1g32810.1 68414.m04044 expressed protein 31 3.5
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 4.6
At5g62640.1 68418.m07862 proline-rich family protein contains pr... 31 6.0
At4g26890.1 68417.m03869 protein kinase family protein contains ... 31 6.0
At3g53320.1 68416.m05883 expressed protein 31 6.0
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 30 8.0
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 30 8.0
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 30 8.0
At4g37280.1 68417.m05276 MRG family protein contains Pfam domain... 30 8.0
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 30 8.0
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 30 8.0
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 30 8.0
At1g23540.1 68414.m02960 protein kinase family protein contains ... 30 8.0
At1g19980.1 68414.m02503 cytomatrix protein-related contains wea... 30 8.0
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 42.3 bits (95), Expect = 0.002
Identities = 62/300 (20%), Positives = 122/300 (40%), Gaps = 30/300 (10%)
Query: 20 PEEIELVSSTAPDEDKKEKSEDC---LEEPAMTKRK---NSDELV---QSSPKIQKLELV 70
P+++E SS A D D++EK+++ L++ + ++ + +SDE + + P+ K V
Sbjct: 59 PKKVESSSSDASDSDEEEKTKETPSKLKDESSSEEEDDSSSDEEIAPAKKRPEPIKKAKV 118
Query: 71 EDEFAVSSQTLDDEVSEITRSKRLCDNLELXXXXXXXXXXXXXXXLLTKRSNSADIVKTP 130
E + T D+E + + + + + ++ + K+ +
Sbjct: 119 ESSSSDDDSTSDEETAPVKKQPAVLEKAKVESSSSDDDSSSDEETVPVKKQPAVLEKAKI 178
Query: 131 KTLKSRPASVEVTKSTPKKNLQANIELKYTADRVTSRPSIEFVKEIPPPKVPDTIPEIPE 190
++ S S ++ P K A +E K A+ +S +E P P + I +
Sbjct: 179 ESSSSDDDSSSDEETVPMKKQTAVLE-KAKAESSSSDDGSSSDEE-PTPAKKEPIVVKKD 236
Query: 191 SLDDSQGLHLEMSPTPDDENAKIKYNSDPILKDSDVAMKPAKVEKASSEGNAYSDNN--- 247
S D+S + D+E +K ++KD AK E +SSE + SD+
Sbjct: 237 SSDES---------SSDEETPVVKKKPTTVVKD-------AKAESSSSEEESSSDDEPTP 280
Query: 248 MSIPRTNLNLSKTSDLESTDSVCSMNLESPDHIPSAASKLISKLSNGNSSTPTDATEDSD 307
P N + S+ S ES D P +S ++ S+ +++++SD
Sbjct: 281 AKKPTVVKNAKPAAKDSSSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESD 340
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 41.5 bits (93), Expect = 0.003
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 545 PMAAKTKRAILPTQPEEAEFMYDMNSP---EMVPSNGDGGHSPKSPKDEKPLSSMVATPK 601
P A + K+ I P EE SP + P H P +PK+ KP S +PK
Sbjct: 415 PKAPEPKKEINPPNLEEPSKPKPEESPKPQQPSPKPETPSHEPSNPKEPKPESPKQESPK 474
Query: 602 SVSKLKQKRRPNSPRPATPVDKMMKQEYPGHAPDT 636
+ + K +P SP+ +P + K E P P++
Sbjct: 475 TE---QPKPKPESPKQESPKQEAPKPEQPKPKPES 506
Score = 33.9 bits (74), Expect = 0.65
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 558 QPEEAEFMYDMNSPEMVPSNGDGGHSPKSPK-DEKPLSSMVAT-PKSVSKLKQKRRPNSP 615
QP + E SP+ P + ++PK PL S V P S +K KRRP P
Sbjct: 569 QPPKQETPKPEESPKPQPPKQEQPPKTEAPKMGSPPLESPVPNDPYDASPIK-KRRPQPP 627
Query: 616 RPATPVDKMMK-QEYPGHAP 634
P+T K Q P H+P
Sbjct: 628 SPSTEETKTTSPQSPPVHSP 647
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 37.1 bits (82), Expect = 0.070
Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Query: 471 ALMKKLQEIFSHIREVSDDGGRSISDDK------VSIAVQTSLSTEGSISNGNASPEEVS 524
A++K + + + ++ V++ G+SI + V+ ++ +S ++GS S+ N S +
Sbjct: 155 AMVKWTRMVITFVKSVAEKRGKSIDESSYGLDVDVNASIGSSSGSDGSSSSDNESSSN-T 213
Query: 525 KCDKTTPKSSLKKTRVRGRRPMAAKTKRAILPTQPEEAEFMYDMNSPEMVP--SNGDGGH 582
K T+ KS + T +KT+ + + + + +S + G
Sbjct: 214 KSQGTSSKSGSESTAGSIETNTGSKTEAGSKSSSSAKTKEVSGGSSGNTYKDTTGSSSGA 273
Query: 583 SPKSPKDEKPLSSMVATPKSVSKLKQKRRPNSPRPATP 620
SP P + +TP + P++P P+TP
Sbjct: 274 SPSGSPTPTPSTPTPSTPTPSTPTPSTPTPSTPTPSTP 311
Score = 31.9 bits (69), Expect = 2.6
Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 225 DVAMKPAKVEKASSEGNAYSDNNMSIPRTNLNLSKTSDLESTDSVCSMNLESPDHI--PS 282
DV + + + S+G++ SDN S + S S EST N S S
Sbjct: 186 DVDVNASIGSSSGSDGSSSSDNESSSNTKSQGTSSKSGSESTAGSIETNTGSKTEAGSKS 245
Query: 283 AASKLISKLSNGNS-STPTDAT-EDSDCTPDMVKLNNIKGKRLKNESFRASNTTTPSTIS 340
++S ++S G+S +T D T S +P G S +T TPST +
Sbjct: 246 SSSAKTKEVSGGSSGNTYKDTTGSSSGASP--------SGSPTPTPSTPTPSTPTPSTPT 297
Query: 341 PLQNGHSLPISTPHIPA 357
P S P TP PA
Sbjct: 298 PSTPTPSTP--TPSTPA 312
>At1g07480.2 68414.m00801 transcription factor IIA large subunit /
TFIIA large subunit (TFIIA-L) identical to transcription
factor IIA large subunit GI:2826884 from [Arabidopsis
thaliana]
Length = 375
Score = 36.7 bits (81), Expect = 0.092
Identities = 49/220 (22%), Positives = 86/220 (39%), Gaps = 17/220 (7%)
Query: 144 KSTPKKNLQANIELKYTADRVTSRPSIEFVKEIPPPKVPDTIPEIPESLDDSQGLHLEMS 203
K TP L ++ + Y P+ E + P + P P +P + D+S ++
Sbjct: 65 KPTPGGPLTHDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTP-LPGTADNSSMYNIPTG 123
Query: 204 ----PTPDDENAKIKYNSDPILKDSDVAMKPAKVEKASSEGN-AYSDNNMSIPRTNLNLS 258
PTP EN N D + S P+ + N AY D R N N
Sbjct: 124 SSDYPTPGTENG---VNIDVKARPSPYMPPPSPWTNPRLDVNVAYVDGRDEPERGNSNQQ 180
Query: 259 KTSDLESTDSVCSMNLESPDHIPSAASKLISKLSNGNSSTPTDATEDSDCTPDMVKLNNI 318
T DL S +S H + S I + + P + +C D ++ +I
Sbjct: 181 FTQDLFVPSSGKRKRDDSSGHYQNGGS--IPQQDGAGDAIPE---ANFEC--DAFRITSI 233
Query: 319 KGKRLKNESFRASNTTTPSTISPLQNGHSLPISTPHIPAF 358
+++ + F +S++ P P+ + + +STP+I ++
Sbjct: 234 GDRKVPRDFF-SSSSKIPQVDGPMPDPYDEMLSTPNIYSY 272
>At1g07480.1 68414.m00800 transcription factor IIA large subunit /
TFIIA large subunit (TFIIA-L) identical to transcription
factor IIA large subunit GI:2826884 from [Arabidopsis
thaliana]
Length = 375
Score = 36.7 bits (81), Expect = 0.092
Identities = 49/220 (22%), Positives = 86/220 (39%), Gaps = 17/220 (7%)
Query: 144 KSTPKKNLQANIELKYTADRVTSRPSIEFVKEIPPPKVPDTIPEIPESLDDSQGLHLEMS 203
K TP L ++ + Y P+ E + P + P P +P + D+S ++
Sbjct: 65 KPTPGGPLTHDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTP-LPGTADNSSMYNIPTG 123
Query: 204 ----PTPDDENAKIKYNSDPILKDSDVAMKPAKVEKASSEGN-AYSDNNMSIPRTNLNLS 258
PTP EN N D + S P+ + N AY D R N N
Sbjct: 124 SSDYPTPGTENG---VNIDVKARPSPYMPPPSPWTNPRLDVNVAYVDGRDEPERGNSNQQ 180
Query: 259 KTSDLESTDSVCSMNLESPDHIPSAASKLISKLSNGNSSTPTDATEDSDCTPDMVKLNNI 318
T DL S +S H + S I + + P + +C D ++ +I
Sbjct: 181 FTQDLFVPSSGKRKRDDSSGHYQNGGS--IPQQDGAGDAIPE---ANFEC--DAFRITSI 233
Query: 319 KGKRLKNESFRASNTTTPSTISPLQNGHSLPISTPHIPAF 358
+++ + F +S++ P P+ + + +STP+I ++
Sbjct: 234 GDRKVPRDFF-SSSSKIPQVDGPMPDPYDEMLSTPNIYSY 272
>At4g19570.1 68417.m02877 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI4
DnaJ homolog subfamily B member 12 {Mus musculus};
contains Pfam profile PF00226: DnaJ domain
Length = 558
Score = 36.3 bits (80), Expect = 0.12
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 583 SPKSPKDEKPLSSMVATPKSVSKLKQKRRPNSPRPATPVDKMMKQEYPGHAPD 635
+PK + +KP SS TP + K++ RPN P P P+ M + P PD
Sbjct: 150 TPKPTESDKPASSYGPTPPPEPRPKRRPRPNIPEPDIPM-PMPTRHKPKSKPD 201
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 33.9 bits (74), Expect = 0.65
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 33 EDKKEKSEDCLEEPAMTKRKNSDELVQSSPKIQKLELVEDEFAVSSQTLDDEVSEITRSK 92
E + +S + EE +++ + L +++ + +ELVE+E A+ + LD SE+ K
Sbjct: 329 EKSQTRSRELAEEIERKRKELTAVLDKTAEYGKTIELVEEELALQQKLLDIRSSELVSKK 388
Query: 93 RLCDNLEL 100
+ D L L
Sbjct: 389 KELDGLSL 396
>At3g59370.1 68416.m06621 expressed protein hypothetical protein
F12F1.4 - Arabidopsis thaliana, EMBL:AC002131
Length = 95
Score = 33.9 bits (74), Expect = 0.65
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 20 PEEIELVSSTAPDEDKKEKSEDCLEEPAMTKRKNSDELVQSSPKIQKLELVEDE 73
PEE+ + + +ED++EK+ E P + + + E V +P+ +K E +E++
Sbjct: 25 PEEVFVEDAEKTNEDEEEKAAVITETPTVVEEEKKAEEVTETPEEKKTEALEEK 78
>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
domain-containing protein low similarity to DEAD box
protein DDX1 [Gallus gallus] GI:16323037, ryanodine
receptor [Caenorhabditis elegans] GI:1871447; contains
Pfam profile PF00622: SPRY domain
Length = 509
Score = 33.5 bits (73), Expect = 0.86
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 512 SISNGNASPEEVSKCDKTTPKSSLKKTRVRGRRPMAAKTKRAILPTQPEEAEFMYDMNSP 571
S++N N S E + D+ KK + A K P Q +E M +
Sbjct: 149 SVANQNGSAMEEDEGDEEQDDPPHKKLKQLDCLTSVA-VKEEEEPEQVLPSEAMVVEEAA 207
Query: 572 EMVPSNGDGGHSPKSPKDEKPLSSMVATPKSVSKLKQKRRPNSPRPATPVDKMM---KQE 628
+V S + K K +K +++ T KS K K+K + N+P PA DK++
Sbjct: 208 TLVAS------AAKKSKSKKKNNNVWVT-KSTRKGKKKSKANTPNPAAVEDKVLITPVPR 260
Query: 629 YPGHAPDTVVLAKWVDKRYYSGKVVEITD 657
+P DT L + K Y + K VEI++
Sbjct: 261 FPDKGDDTPDLEICLSKVYKAEK-VEISE 288
>At5g31685.1 68418.m03766 expressed protein ; expression supported
by MPSS
Length = 519
Score = 33.1 bits (72), Expect = 1.1
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 132 TLKSRPASVEVTKSTPKKNLQANIELKYTADRVTSRPSI--EFVKEIPPPKVPDTIPEIP 189
T K V K + +A +E + + + PS E V E+ P PD + +IP
Sbjct: 321 TFKPTIREVYEKKRLATERKRAAVERRVVEESGAAEPSWAREVVPEVATPAAPDVVDQIP 380
Query: 190 ESLDDSQGLHLEMSPTPDDENAKIK--YNSDPILKDSDVAMKPAKVE 234
+ D++G +P P ++N +I +N+ L D + P V+
Sbjct: 381 GNTVDTEG-----NPIPPNKNRQIDLWHNNSKQLPPKDRSGLPVLVQ 422
>At5g28970.1 68418.m03584 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1172
Score = 32.7 bits (71), Expect = 1.5
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 7/149 (4%)
Query: 450 VVPQP--PRKSVSNPTYSIKGYDALMKKLQEIFSHIREVSDDGGRSI-SDDKVSIAVQTS 506
V PQP P ++ S S +G A L++ H E D+G S +S Q+
Sbjct: 470 VEPQPDDPMEANSPDGNSPQGNAASQYILKDPNGH--EADDEGKIQFDSSANLSQKKQSP 527
Query: 507 LSTEGSISNGNASPEEVSKCDKTTPKSSLKKTRVRGRRPMAAKTKRAILPTQPEEAEFMY 566
L + + + + E +T P+ + +RG +T ++L TQPEE +
Sbjct: 528 LEQDNIMEDTLETVEASLSVFETQPEVKIADDPMRGETLETVETFHSVLETQPEEN--ID 585
Query: 567 DMNSPEMVPSNGDGGHSPKSPKDEKPLSS 595
D + E+ + HS + P+ + P+ +
Sbjct: 586 DDHMTEVTLESAAISHSVELPQPDDPMEA 614
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 32.7 bits (71), Expect = 1.5
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 500 SIAVQTSLSTEGSISNGNASPEEVSKCDKTTPKSSLKKTRVRGRRPMAAKTKRAILPTQP 559
SI QTS+ + GS+S A E+ + P SS+ T +RG R +P QP
Sbjct: 338 SIPTQTSIESMGSLSPVAAKEEDATTLPSRKPPSSVADTPLRG-------IGRVGIPNQP 390
Query: 560 EEAEFMYDMNSPEMVPSNG 578
+ ++ P +P+NG
Sbjct: 391 QPSQ------PPSPIPANG 403
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 32.7 bits (71), Expect = 1.5
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 277 PDHIPSAASKLISKLSNGNSSTPTDATEDSDCTPDMVKLNNIKGKRLKNESFRASNTT-- 334
PDH + + +K +N NS P + + S N ++ ++ KN S R +NTT
Sbjct: 1231 PDHNMTTSPAGTTKFANANSGFPQNLVQSSS--------NQVQSQQWKNNSPRTTNTTQA 1282
Query: 335 -TPSTISP 341
+PS +SP
Sbjct: 1283 QSPSMLSP 1290
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 32.7 bits (71), Expect = 1.5
Identities = 24/108 (22%), Positives = 43/108 (39%)
Query: 530 TPKSSLKKTRVRGRRPMAAKTKRAILPTQPEEAEFMYDMNSPEMVPSNGDGGHSPKSPKD 589
+P++ + +T A+ R++ P P + SP+ + S +P
Sbjct: 118 SPRAEVPRTLSPKPPSPRAEVPRSLSPKPPSPRADLPRSLSPKPFDRSKPSSASANAPPT 177
Query: 590 EKPLSSMVATPKSVSKLKQKRRPNSPRPATPVDKMMKQEYPGHAPDTV 637
+P S+ V + + RP+SPR A+P K P P T+
Sbjct: 178 LRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTL 225
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 32.7 bits (71), Expect = 1.5
Identities = 24/108 (22%), Positives = 43/108 (39%)
Query: 530 TPKSSLKKTRVRGRRPMAAKTKRAILPTQPEEAEFMYDMNSPEMVPSNGDGGHSPKSPKD 589
+P++ + +T A+ R++ P P + SP+ + S +P
Sbjct: 117 SPRAEVPRTLSPKPPSPRAEVPRSLSPKPPSPRADLPRSLSPKPFDRSKPSSASANAPPT 176
Query: 590 EKPLSSMVATPKSVSKLKQKRRPNSPRPATPVDKMMKQEYPGHAPDTV 637
+P S+ V + + RP+SPR A+P K P P T+
Sbjct: 177 LRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTL 224
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 32.7 bits (71), Expect = 1.5
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 5/138 (3%)
Query: 505 TSLSTEGSISNGNASPEEVSKCDKTTPKSSLKKTR-VRGRRPMAAKTKRAILPTQPEEAE 563
T +S S+S+ +P SK +T +S+ TR +A R+ P A
Sbjct: 236 TPMSRSTSLSSSRLTPT-ASKPTTSTARSAGSVTRSTPSTTTKSAGPSRSTTPLSRSTAR 294
Query: 564 FMYDMNSPEMVPSNGDGGHSPKSPKDEKPLSSMVATPKSVSKLKQKRRPNSPRPATPVDK 623
+ P + PS S S +P++S A + + + +P+SP PA P+
Sbjct: 295 SSTPTSRPTLPPSKTI---SRSSTPTRRPIASASAATTTANPTISQIKPSSPAPAKPMPT 351
Query: 624 MMKQEYPGHAPDTVVLAK 641
K A V ++
Sbjct: 352 PSKNPALSRAASPTVRSR 369
>At1g18840.1 68414.m02346 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 572
Score = 32.7 bits (71), Expect = 1.5
Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 36/250 (14%)
Query: 124 ADIVKTPKTLKSRPASVEVTKSTPKKNLQANIELKYTADRVTSRPSIEFVKEIPPPKVPD 183
A + K+ K S P VE + PKK+++ K + + + + E+ PK
Sbjct: 260 ASLRKSQKKFASNPQIVEAEFARPKKSVR-----KVPSSNLDNSSVAQTSSELEKPKRSF 314
Query: 184 TIPEIPESLDDSQGLHLEMSPTPDDENAK--IKYNSDPILKDSDVAMKPAKVEKASSEGN 241
+S++ + +P D E K ++ +P++++S ++P V + + E
Sbjct: 315 RKVSTSQSVEPLPSMD---NPQVDLEKVKRGLRKVHNPVVENS---IQPQLVPQIAVEK- 367
Query: 242 AYSDNNMSIPRTNLNLSKTS-DLESTDSVCSMNLESPD-----HIP-----SAASKLISK 290
P +L S + D E D V ++ P+ H P S S L+++
Sbjct: 368 ---------PNGSLEESVNAFDEEKEDEVAETVVQQPEELIQTHTPLGTNESLDSTLVNQ 418
Query: 291 LSNGNSSTPTDATED--SDCTPDMVKLNNIKGKRLKNESFRASNTTTPSTISPLQNGHSL 348
+ + + ED + TP N GK + +AS+ T T ++G+
Sbjct: 419 IEESEENVMAEEKEDVKEERTPKQNHKENSAGKENQKSGKKASSVTATQTAEFQESGNGN 478
Query: 349 PISTPHIPAF 358
S+P IP++
Sbjct: 479 QTSSPGIPSY 488
>At5g51670.1 68418.m06406 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 474
Score = 32.3 bits (70), Expect = 2.0
Identities = 20/92 (21%), Positives = 38/92 (41%)
Query: 181 VPDTIPEIPESLDDSQGLHLEMSPTPDDENAKIKYNSDPILKDSDVAMKPAKVEKASSEG 240
VP + +P SL S + P+P+DE S L++S +KP + +
Sbjct: 261 VPTVVSSLPRSLSSSSSSMNLVHPSPNDEERDKTTTSSAFLEESSRLLKPPETTLGGAGV 320
Query: 241 NAYSDNNMSIPRTNLNLSKTSDLESTDSVCSM 272
+ N + + + + L++ D + SM
Sbjct: 321 ALHYANLIVVMEKMIKQPQLVGLDARDDLYSM 352
>At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 32.3 bits (70), Expect = 2.0
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 582 HSPKSPKDEKPLSSMVATPKSVSKLK--QKRRPNSPRPATP 620
HSPK + + SS ++PKS SK K +K PN+P+ P
Sbjct: 38 HSPKKKRTKTVASSSSSSPKSASKPKYTKKPDPNAPKITRP 78
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 32.3 bits (70), Expect = 2.0
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
Query: 481 SHIREVSDDGGRSISDDKVSIAVQTSLSTEGSISNGNASPEEVSKCDKTTPKSSLKKTRV 540
S E +D G+ V + + + + N +A + K + K ++
Sbjct: 666 SQDEEAADQTGQEEDASTVPLTKKAKTGKQSKMDNSSAKKGSGAGSSKAKATPASKSSKT 725
Query: 541 RGRRPMAAKTKRAILPTQPEEAEFMYDMNSPEMVPSNGDGGHSPKSPKDEKPLSSMVATP 600
A+K+K + ++ EEA + E + G G S + +K +SS+ +
Sbjct: 726 SQDDKTASKSKDSKEASREEEASSEEESEEEEPPKTVGKSG----SSRSKKDISSVSKSG 781
Query: 601 KSVSKLKQKRRPN 613
KS + K+K P+
Sbjct: 782 KSKASSKKKEEPS 794
>At4g08630.1 68417.m01420 expressed protein ; expression supported
by MPSS
Length = 845
Score = 32.3 bits (70), Expect = 2.0
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 531 PKSSLKKTRVRGRRPMAAKTKRAILPTQPEEAEFMYDMNSPEMVPSNGDGGHSPKSPKDE 590
P+SS+ KT+ +GR P+ A +RA + +E ++Y + P + G S +SP +
Sbjct: 201 PQSSMNKTQPQGR-PVMAAHQRADEDNEDDETPYVYTSSIPSVGLPGGRAARS-RSPLTK 258
Query: 591 KP 592
P
Sbjct: 259 NP 260
>At1g02970.1 68414.m00267 protein kinase, putative similar to
Wee1-like protein GI:5821717 from [Zea mays]
Length = 500
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 293 NGNSSTPTDATED-SDCTPDMVKLNNIKGKRLKNESFRASNTTT 335
N N + D ++D S C VKLN +K KR + ESF +++ +
Sbjct: 109 NQNLMSGLDISKDHSPCPRSPVKLNTVKSKRCRQESFTGNHSNS 152
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 31.9 bits (69), Expect = 2.6
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 22 EIELVSSTAPDEDKKEKSEDCLEEPAMTKRKNSDELVQSSPKIQKLELVEDEFAVSSQTL 81
EI ++ P+E KE EE NS+ +V + + +E E+E A + ++L
Sbjct: 1126 EICSINQNQPEEQVKEACSK--EEQEKEISTNSENIVNETYALHSVEAAEEETATNGESL 1183
Query: 82 DD 83
DD
Sbjct: 1184 DD 1185
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 31.9 bits (69), Expect = 2.6
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 246 NNMSIPRTNLNLSKTSDLESTDSVCSMNLES--PDHIPSAASKLISKLSNGNSSTPTDAT 303
+N P N+ + S ST S+C ++ + PD IP+ + L S S +++
Sbjct: 18 SNQKNPNPNVAFTNHSLSLSTPSLCRLHRHATFPDSIPAKSRNLTSYFSTTTQEPVLESS 77
Query: 304 EDSDCTPDMVKLNNIKGKRLKNESFRASNTTTPSTISPL 342
S P++V+ I RL ++ T+TP I L
Sbjct: 78 SSSSSAPEVVE-EEISKTRLIAQN--VPWTSTPEDIRSL 113
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 31.9 bits (69), Expect = 2.6
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
Query: 512 SISNGNASPEEVSKCDKTTPKSSLKKTRVRGRRPMAAKTKRAILPTQPEEAEFMYDMNSP 571
S+ +PE S T P++ + ++ GRRP +T+ P P+ YD
Sbjct: 183 SLETRPRTPERRSNTSDTRPRTPIHESAATGRRPQTPETR----PRTPDHRYATYDNRPR 238
Query: 572 EMVPSNGDGGHSPKSPKDE-KPLSSMVATPKSVSKLK-QKRRPNSPRPATPVDKMMKQEY 629
+ + P++P+ + A P + + + RP TP + +
Sbjct: 239 TPIHESAATERRPQTPETRPRTPEHRSAIPDTRPRTPIHESAATGRRPQTPETRPRTAQR 298
Query: 630 PGHAPD 635
G +P+
Sbjct: 299 RGRSPE 304
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 31.9 bits (69), Expect = 2.6
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 26 VSSTAPDEDKKEKSEDCLEEPAMT---KRKNSDELVQSSPKIQKLELVEDEFAVSSQTLD 82
V S A D K+ + E + KR+N ELV+ QK + EDE ++ ++
Sbjct: 1562 VESKANDGSSKKNETEGQESTGLRGRKKRENHQELVELETSDQKKGVKEDEVVGKAEIIE 1621
Query: 83 DEVSEITR----SKRLCDNLEL 100
DE + +R+ D LE+
Sbjct: 1622 DEYDSSRKIHEHEERMSDKLEM 1643
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 31.5 bits (68), Expect = 3.5
Identities = 19/57 (33%), Positives = 23/57 (40%)
Query: 580 GGHSPKSPKDEKPLSSMVATPKSVSKLKQKRRPNSPRPATPVDKMMKQEYPGHAPDT 636
G +PKS P +S A PKS S + P + PA K P AP T
Sbjct: 201 GSMAPKSGSPVSPTTSPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTIPPSSAPMT 257
>At1g32810.1 68414.m04044 expressed protein
Length = 654
Score = 31.5 bits (68), Expect = 3.5
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 32 DEDKKEKSEDCLEEPAMTKRKNSDELVQSSPKIQKLELVEDEFAVSSQTLDDEVSEITRS 91
D D EDC+ + +R DE + +PK K + + ++T VS+ S
Sbjct: 184 DNDANTNDEDCVSSDVIRERDGDDEPSEKAPKHPKFSITSKKSMQHNRTSHSSVSKTRES 243
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 31.1 bits (67), Expect = 4.6
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 8/128 (6%)
Query: 518 ASPEEVSKCDKTTPKSSLKKTRVRGRRPMAAKTKRAILPTQPEEA-EFMYDMNSPEMVPS 576
+ PE V + K KT + + P +PE E SP+ PS
Sbjct: 407 SKPEPVMPKPSDSSKPETPKTPEQPSPKPQPPKHESPKPEEPENKHELPKQKESPKPQPS 466
Query: 577 NGDGGHSPKSPKDE---KPLSSMVATP-KSVSKLKQKR--RPNSPRPATPVDKMMKQEYP 630
+ P+ PK E KP + P K VS + + P+ P A+PV K + P
Sbjct: 467 KPEDSPKPEQPKPEESPKPEQPQIPEPTKPVSPPNEAQGPTPDDPYDASPV-KNRRSPPP 525
Query: 631 GHAPDTVV 638
DT V
Sbjct: 526 PKVEDTRV 533
>At5g62640.1 68418.m07862 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 520
Score = 30.7 bits (66), Expect = 6.0
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 177 PPPKVPDTIPEIPESLDDSQ--GLHLEMSPTPDDENAKIKYNSDPILKDSDVAMKPAKVE 234
PPP++P + P L SQ G E S D S P+L + ++
Sbjct: 239 PPPQLPQSSQPPPPGLSGSQGDGRFPESSDFTFDNRMNANITSVPLLPPPGIPSNESESR 298
Query: 235 KASSEGNAYSDNNMS 249
A S +++ + N+S
Sbjct: 299 PAESNASSFQNANLS 313
>At4g26890.1 68417.m03869 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 444
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 24 ELVSSTAPDEDKKEKSEDCLEEPAMTKRKNSDELVQSSPKIQKLELV----EDEFAVSSQ 79
EL+ D+D++ ++ DCL+ + D+ S + K LV ED FA S+
Sbjct: 246 ELLKHPFLDDDEESQTSDCLKNKTSSPSTVLDQRFWDSCESSKSHLVSIDHEDPFAEYSE 305
Query: 80 TLDDEVSEITR 90
+LD I +
Sbjct: 306 SLDSPADRIEK 316
>At3g53320.1 68416.m05883 expressed protein
Length = 553
Score = 30.7 bits (66), Expect = 6.0
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 25/197 (12%)
Query: 180 KVPDTIPEI-PESLDDSQGLHLEMSPTPDDENAKIKYNSDPI-------LKDSDVAMKPA 231
K P+ + ++ P S + L++S T ++N+K+ +P+ + V KP
Sbjct: 244 KPPNGLSKVRPLSTTSTNRSSLDISKTQQEKNSKLPAGKEPLGPRISMSRRAKPVLPKPG 303
Query: 232 KVEKASSEGNAYSDNNMSIPRTNLNL-----SKTSDLESTDSVCSMNLESPDHIPSA--A 284
K+SS + S N M+ ++L S S S DS+ N +S + S A
Sbjct: 304 VPFKSSSRSSDASKNEMTSSCSSLESCASASSSASHKPSIDSIKKKN-DSSSRLSSQPLA 362
Query: 285 SKLISKLSNGNSSTPTDATEDSDCTPDMVKLNNIKGK--RLKNESFRASNTTTPSTISPL 342
++ S+ G P T + P + G +ES RAS T S +
Sbjct: 363 NRSTSRGIMGQPRIPPQQTNKTS-KPKLSSSVPTAGSISDYSSESSRASET------SKM 415
Query: 343 QNGHSLPISTPHIPAFD 359
NG+ +S +PA D
Sbjct: 416 ANGNQKTVSREKVPAND 432
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 30.3 bits (65), Expect = 8.0
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 477 QEIFSHIREVSDDGGRSISDDKVSIAVQTSLSTEGSISNGNASPEEVSKCDKTTPKSSLK 536
+E + E ++ I D A Q S S E ++ + S EE K + + SS K
Sbjct: 539 EEKEQEVEEEEEENENGIPDKSEDEAPQLSESEE-NVESEEESEEETKKKKRGSRTSSDK 597
Query: 537 KTRVRGRRPMAAKTKRAILPTQPEEAEFMYDMNSPEMVPSNGDGGHSPKSPKDEKPLSSM 596
K G+ +++K+ +PT+ + P+ G KS D
Sbjct: 598 KESA-GK----SRSKKTAVPTKS---------SPPKKATQKRSAGKRKKSDDDSD----- 638
Query: 597 VATPKSVSKLKQKRRPNSPRPATPVDKMMKQE 628
+PK+ SK K+ +P + A P+ + K++
Sbjct: 639 -TSPKASSKRKKTEKPAKEQAAAPLKSVSKEK 669
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 30.3 bits (65), Expect = 8.0
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 192 LDDSQGLHLEMSPTPDDENAKIKYNSDPILKDSDVAMKPAKVEKASSEGNAYSDNNMSIP 251
L SQ + + T + NSDP K++ + ++S+ N+ S S P
Sbjct: 341 LSVSQNVDPLLKETKSLGRLSVSQNSDPSTKETK------SIGRSSTSQNSESSMKESKP 394
Query: 252 RTNLNLSKTSDLESTDSVCSMNLESPDHIPSAASKLISKLSNGNSSTPTDA 302
L++S+ SD+ S P +S +SK ++G S+ ++A
Sbjct: 395 LGRLSVSQNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSGVSTAVSNA 445
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 30.3 bits (65), Expect = 8.0
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 192 LDDSQGLHLEMSPTPDDENAKIKYNSDPILKDSDVAMKPAKVEKASSEGNAYSDNNMSIP 251
L SQ + + T + NSDP K++ + ++S+ N+ S S P
Sbjct: 341 LSVSQNVDPLLKETKSLGRLSVSQNSDPSTKETK------SIGRSSTSQNSESSMKESKP 394
Query: 252 RTNLNLSKTSDLESTDSVCSMNLESPDHIPSAASKLISKLSNGNSSTPTDA 302
L++S+ SD+ S P +S +SK ++G S+ ++A
Sbjct: 395 LGRLSVSQNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSGVSTAVSNA 445
>At4g37280.1 68417.m05276 MRG family protein contains Pfam domain
PF05712: MRG
Length = 320
Score = 30.3 bits (65), Expect = 8.0
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 292 SNGNSSTPTDATEDSDCTPDMVKLNNIKGKRLKNESFRASNTTTPSTISPLQNGHSL 348
S ++ T T ++ D+ D K N KGK+ K+ES + T + +Q SL
Sbjct: 106 SGRSAQTKTRSSADTKADKDDTKTNAAKGKKRKHESGNEKDNVTAEKLMKIQIPASL 162
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 30.3 bits (65), Expect = 8.0
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 1087 LCGDQDTFVKFWERVCNLTGATTRVVNEEDL 1117
LCG + V FW+R+CN GA R++ EDL
Sbjct: 161 LCGRE--IVDFWDRLCNSLGA--RMITVEDL 187
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 30.3 bits (65), Expect = 8.0
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 203 SPTPDDENAKIKYNSDPILKDSDVAMKPAKVEKASSEGNAYSDNNMSIPRTN------LN 256
S + DD +++ +P K + KPA + +SS+ ++ D+ P T
Sbjct: 156 SSSEDDSSSE----DEPAKKPAAKIAKPAAKDSSSSDDDSDEDSEDEKPATKKAAPAAAK 211
Query: 257 LSKTSDLESTDSVCSMNLESPDHIPSAASKLISKLSNGNSS-TPTDATEDSDCTPDMVKL 315
+ +SD DS E P A +K K S+ SS + D +ED + TP K
Sbjct: 212 AASSSDSSDEDSDEESEDEKPAQ-KKADTKASKKSSSDESSESEEDESEDEEETP---KK 267
Query: 316 NNIKGKRLKNESFRASNTTTPST 338
+ + + E A TPST
Sbjct: 268 KSSDVEMVDAEKSSAKQPKTPST 290
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 30.3 bits (65), Expect = 8.0
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
Query: 205 TPDDENAKIKYNSDPILKDSDVAMKPAKVEKASSEGNAYSDNNMSIPRTNLNLSKTSDLE 264
TP +K Y S + S KP + +ASS Y N+ PR + L+KT +
Sbjct: 807 TPSLRASKEPYKSSSLSGSSSTRKKPPRSHEASS-SRGY--NHPPSPRVSKELNKTPSIS 863
Query: 265 STDSVC-SMNLESPDHIPSAASKLISKLSNGNSSTPTDATEDSDCTPDMVKLNNIKGKRL 323
+ S + + S +++ S + S +T T +P +L+ K +L
Sbjct: 864 GSPSATRNKSPRSSENVNSCGNSSSGGNSVVKRNTDTSIIVSKQESPIKTQLDISKANKL 923
Query: 324 KNE 326
E
Sbjct: 924 LEE 926
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 30.3 bits (65), Expect = 8.0
Identities = 41/172 (23%), Positives = 59/172 (34%), Gaps = 10/172 (5%)
Query: 452 PQPPRKSVSNPTYSIKGYDALMKKLQEIFSHIREVSDDGGRSISDDKVSIAVQTSLSTEG 511
P PP S S P S +L + S + ++D SD S V ++ S
Sbjct: 40 PSPPADSSSTPPLSEPSTPPPDSQLPPLPSILPPLTDSPPPP-SDS--SPPVDSTPSPPP 96
Query: 512 SISNGNASPEEVSKCDKTTPKSSLKKTRVRGR---RPMAAKTKRAILPTQPEEAEFMYDM 568
SN + SP E S+ P S + P + + PT PE +
Sbjct: 97 PTSNESPSPPEDSETPPAPPNESNDNNPPPSQDLQSPPPSSPSPNVGPTNPESPP----L 152
Query: 569 NSPEMVPSNGDGGHSPKSPKDEKPLSSMVATPKSVSKLKQKRRPNSPRPATP 620
SP P++ P SP D + + + S P SP P P
Sbjct: 153 QSPPAPPASDPTNSPPASPLDPTNPPPIQPSGPATSPPANPNAPPSPFPTVP 204
>At1g19980.1 68414.m02503 cytomatrix protein-related contains weak
similarity to CAST1 [Rattus norvegicus]
gi|22138113|gb|AAL07517
Length = 342
Score = 30.3 bits (65), Expect = 8.0
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 42 CLEEPAMTK-RKNSDELVQSSPKIQKLELVEDEFAVSSQTLDDEVSEI 88
C+E K ++ DE+VQ++ KI L +++ S+Q D+ +S +
Sbjct: 181 CIESEFTDKLKRKDDEIVQANTKISSLISYQEQLQSSNQEKDETISRL 228
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.129 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,654,523
Number of Sequences: 28952
Number of extensions: 1217228
Number of successful extensions: 3678
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 3578
Number of HSP's gapped (non-prelim): 121
length of query: 1178
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1089
effective length of database: 9,493,832
effective search space: 10338783048
effective search space used: 10338783048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 65 (30.3 bits)
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