Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001389-TA|BGIBMGA001389-PA|undefined
         (113 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31)                 28   1.6  
SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)              27   2.7  
SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  

>SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31)
          Length = 635

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 65  SIQGILGFDKTYSTASANITQGGIGYNFVNLRMKSERGSKIHYDVYIFA 113
           S + +  ++K Y TA A+ T   +  NF+ L  K  R      DVY+ A
Sbjct: 451 SAEEVRKYEKRYETALASRTTDALAENFLKLTTKLWRVCHPRADVYLKA 499


>SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)
          Length = 375

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 39 YSSKMFRKRVENLHFSLPHVPSIFG 63
          Y+ K  R+++E+ H  +PH  S+FG
Sbjct: 44 YAIKNTRRKMEDKHVIMPHFNSLFG 68


>SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 35 HDVQYSSKMFRKRVENLHFSLPHVPSIFGRSIQGILGFDK 74
          HD++    +F  R  NL   +P  P  FG     ++G  K
Sbjct: 28 HDIRNLHLVFYFRTSNLQGHVPSAPHSFGEVHTAVVGHQK 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,333
Number of Sequences: 59808
Number of extensions: 108060
Number of successful extensions: 251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 3
length of query: 113
length of database: 16,821,457
effective HSP length: 73
effective length of query: 40
effective length of database: 12,455,473
effective search space: 498218920
effective search space used: 498218920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)