Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001389-TA|BGIBMGA001389-PA|undefined
(113 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 27 0.54
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 26 1.7
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 2.2
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 25 2.2
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 3.8
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 3.8
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 24 5.1
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 24 5.1
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 24 6.7
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 23 8.9
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 23 8.9
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 0.54
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 15 IVECGHTFVGTSVNRPLVYHHDVQY-SSKMFRKRVENLHFSLPHVPSIFGRSIQG---IL 70
+ C + F S R +Y H + + + VENLH ++ + ++ G +++G IL
Sbjct: 92 LYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHVENLH-TMDEL-NMTGNALKGSRPIL 149
Query: 71 GFDKTYSTA 79
FDKT+ TA
Sbjct: 150 SFDKTFDTA 158
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 1.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 23 VGTSVNRPLVYHHDVQYSSKMFRKRVENLH 52
V ++N VY H+ SSK F+K ++ LH
Sbjct: 336 VNAAMNTVCVYFHEGP-SSKAFQKHIQRLH 364
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 2.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 35 HDVQYSSKMFRKRVENLHFSLP 56
+D+ ++S +FRKR + +FS P
Sbjct: 309 YDLFFASPVFRKRTSSFYFSQP 330
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 2.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 25 TSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVPSIFGRSI 66
+S+ +PL D Q S MF K E L SL + + R +
Sbjct: 334 SSIKKPLSGAEDEQKSRSMFSKNDEKLKKSLELMEDVIKRDL 375
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 3.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 65 SIQGILGFDKTYSTASANITQGGIGYNFVNLR 96
SI+GI +D A + T GGIG N N+R
Sbjct: 227 SIEGI--YDTLKMCAMISKTAGGIGINIHNIR 256
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 3.8
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 35 HDVQYSSKMFRKRVENLHFSLPHVPSIFGRS 65
H +++ K+ K+ + + +++ H+P ++GRS
Sbjct: 161 HFLKHYHKVRAKKYDEVLYAVYHLPLVYGRS 191
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 24.2 bits (50), Expect = 5.1
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 21 TFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVPSIFGRSIQGILG 71
T V T + P+ HHD++ K+ + L S G ++ + G
Sbjct: 296 TVVSTELREPIRSHHDIERDQAKHVKKALRFYEGLTKRVSANGHAVDILAG 346
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 48 VENLHFSLPHVPSIFGRSIQGIL 70
++NL +SLP V SI S+ GI+
Sbjct: 107 LQNLGYSLPIVGSISETSVSGIM 129
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 23.8 bits (49), Expect = 6.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 38 QYSSKMFRKRVENLHFSL--PHVPSIFG--RSIQGILGFDK 74
Q+S F RVENLH+ + V S+F I+ I+ +D+
Sbjct: 79 QHSENRFGVRVENLHYQVLEKDVLSLFENFHPIRVIMNYDR 119
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 23.4 bits (48), Expect = 8.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 26 SVNRPLVYHHDVQYSSKMFRKR 47
S++ L YHH+V+ +S+ R +
Sbjct: 200 SISHQLNYHHNVKLNSQALRNK 221
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 23.4 bits (48), Expect = 8.9
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 44 FRKRVENLHFSLPHVPSIFGRSIQGILGFDKT 75
F R + H ++ H PS+FG+ I G L D T
Sbjct: 282 FPHRNAHQHNAIAHNPSVFGKPI-GDLTSDPT 312
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.139 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,433
Number of Sequences: 5004
Number of extensions: 16551
Number of successful extensions: 55
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 11
length of query: 113
length of database: 2,362,478
effective HSP length: 64
effective length of query: 49
effective length of database: 2,042,222
effective search space: 100068878
effective search space used: 100068878
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 48 (23.4 bits)
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