GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001389-TA|BGIBMGA001389-PA|undefined
         (113 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771...    36   0.006
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783...    27   3.5  
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    27   4.6  
04_04_1581 - 34581455-34581466,34581525-34581616,34582584-345826...    26   6.1  

>04_04_1580 -
           34576595-34576723,34576905-34576981,34577058-34577104,
           34577864-34577964,34578114-34578203,34578647-34578763,
           34578835-34578992,34579562-34579843,34580367-34580667
          Length = 433

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 20  HTFVGTSVNRPLVYHH-DVQYSSKMFRKRVENLHFSLPHVPSIF 62
           +T V TS   PL +HH  +Q S + F+ RV + + + PH+PS F
Sbjct: 78  YTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNF 121


>05_04_0355 -
           20577189-20577275,20578001-20578129,20578252-20578371,
           20578505-20578741,20578983-20579258,20579375-20579508,
           20580006-20581632
          Length = 869

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 19  GHTFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVP 59
           G   VG S NR +  +H +  S   + K+++NL   L H+P
Sbjct: 829 GRLIVGLS-NREIKKNHGICSSIPFYFKKIDNLIVILDHLP 868


>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 26   SVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVPSI 61
            S N PL+Y H    SS +  K +ENL  SL  V  +
Sbjct: 1315 SSNIPLLYKHYDGQSSSLVIKNLENLKGSLGEVQEL 1350


>04_04_1581 -
           34581455-34581466,34581525-34581616,34582584-34582686,
           34583761-34583837,34583913-34583959,34584494-34584594,
           34584751-34584840,34585152-34585271,34586171-34586517,
           34587013-34587285,34587835-34588165
          Length = 530

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 20  HTFVGTSVNRPLVYHH--DVQYSSKMFRKRVENLHFSLPHVPSIF 62
           +T + T    P  +HH    Q S + F+  V + + + PHVPS F
Sbjct: 87  YTVLPTPAVLPSHHHHHGQSQISQENFQDWVPSNNVAAPHVPSAF 131


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,606
Number of Sequences: 37544
Number of extensions: 95933
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 4
length of query: 113
length of database: 14,793,348
effective HSP length: 73
effective length of query: 40
effective length of database: 12,052,636
effective search space: 482105440
effective search space used: 482105440
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)