GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001389-TA|BGIBMGA001389-PA|undefined
         (113 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    29   0.59 
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    27   3.1  
U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z68337-7|CAA92742.1|  220|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z19154-8|CAE17740.1|  342|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 56   PHVPSIFGRSIQGILGFDKTYSTASANITQGGIGYNFVN 94
            P+ PS+  R+++ I G  K     SA+     IGY+ VN
Sbjct: 1386 PYEPSVRSRNVKAISGRRKVNRVVSASTINCPIGYDLVN 1424


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 15   IVECGHTFVGTSVNRPLVYHHDVQYSSKMFRKR 47
            ++E G   V   V + + Y +++ +  KMFRK+
Sbjct: 2287 VIEIGRLMVEEDVRKWMEYQYEMTFVKKMFRKK 2319


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 22  FVGTSVNRPLVYHHDVQYSSK 42
           F  + +NR  VYH DV YS K
Sbjct: 423 FTESELNRHAVYHSDVMYSCK 443


>U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical
          protein C27F2.4 protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 15 IVECGHTFVGTSVNRPLV 32
          I++ GH FVG  V+RP++
Sbjct: 71 ILDAGHMFVGVDVSRPML 88


>Z68337-7|CAA92742.1|  220|Caenorhabditis elegans Hypothetical
          protein M7.10 protein.
          Length = 220

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 49 ENLHFSLPHVPSIFGRSIQGILGFDKTYSTASANITQ 85
          E  HFS P  P I   S++  + FD  +   S  + Q
Sbjct: 43 EGPHFSRPLPPFIANLSMEAKIEFDSVFKNKSLTLAQ 79


>Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical
           protein C44F1.5 protein.
          Length = 1109

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 50  NLHFSLPHVPSIFGRSIQGILGFDKTYSTASANITQGG 87
           N  FSL  VP    R +Q I+  + T  T   N  + G
Sbjct: 269 NKRFSLVTVPQAVNRVLQSIVAMNPTLKTMGTNKKRKG 306


>Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical
           protein C44F1.5 protein.
          Length = 1109

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 50  NLHFSLPHVPSIFGRSIQGILGFDKTYSTASANITQGG 87
           N  FSL  VP    R +Q I+  + T  T   N  + G
Sbjct: 269 NKRFSLVTVPQAVNRVLQSIVAMNPTLKTMGTNKKRKG 306


>Z19154-8|CAE17740.1|  342|Caenorhabditis elegans Hypothetical
          protein C40H1.8 protein.
          Length = 342

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 17 ECGHTFVGTSVNRPLVYHHDVQY 39
          +CG T   TS+NRPL    + QY
Sbjct: 36 QCGATSCNTSINRPLNCPTNPQY 58


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,900
Number of Sequences: 27539
Number of extensions: 84086
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 8
length of query: 113
length of database: 12,573,161
effective HSP length: 72
effective length of query: 41
effective length of database: 10,590,353
effective search space: 434204473
effective search space used: 434204473
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)