GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001389-TA|BGIBMGA001389-PA|undefined
         (113 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44920.1 68414.m05147 expressed protein                             29   0.73 
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing...    28   1.7  
At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put...    26   5.1  
At4g12380.1 68417.m01956 hypothetical protein                          25   9.0  
At4g09190.1 68417.m01520 F-box family protein contains Pfam PF00...    25   9.0  

>At1g44920.1 68414.m05147 expressed protein
          Length = 258

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 11/22 (50%), Positives = 18/22 (81%)

Query: 66  IQGILGFDKTYSTASANITQGG 87
           ++G++ FDK  ST+S+NIT+ G
Sbjct: 86  LEGVIQFDKPSSTSSSNITKWG 107


>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
           protein 
          Length = 775

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 68  GILGFDKTYSTASANITQGGIGYNFVNLR 96
           G+ G  +     S ++T+G +GYN ++LR
Sbjct: 345 GVFGRFRARHNRSGSLTEGSLGYNTIDLR 373


>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
           putative contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain
          Length = 772

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 42  KMFRKRVENLHFSLPHVPSIFGRSIQG 68
           K  RKR ++   S PH+ S +GR+ +G
Sbjct: 336 KCLRKREDSEQLSKPHLTSEYGRAREG 362


>At4g12380.1 68417.m01956 hypothetical protein
          Length = 160

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 72 FDKTYSTASANITQGGIGYNFVNLRMK 98
          +D +YS    NI+ G + Y FV  + K
Sbjct: 65 YDVSYSNGLINISMGRVSYRFVIYKTK 91


>At4g09190.1 68417.m01520 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain; similar to Probable
           disease resistance RPP8-like protein 2
           (Swiss-Prot:Q9MAG6) [Arabidopsis thaliana]
          Length = 383

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 45  RKRVENLHFSLPHVPSIFGRSIQGILGFD 73
           R  +    F+LP + S  GR + G LG+D
Sbjct: 134 RNPITKSFFTLPKLDSKEGRPLTGFLGYD 162


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,034
Number of Sequences: 28952
Number of extensions: 80809
Number of successful extensions: 252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 5
length of query: 113
length of database: 12,070,560
effective HSP length: 72
effective length of query: 41
effective length of database: 9,986,016
effective search space: 409426656
effective search space used: 409426656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)