Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001388-TA|BGIBMGA001388-PA|undefined
         (113 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_78| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   0.67 
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.7  
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)                      26   6.3  
SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)        26   8.3  
SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31)                 26   8.3  

>SB_78| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 41  AKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHSTASANITQGGIWFTFVNLRMKSE 100
           AK  +KR ++  YV P++P+ + + +  IL ++  ++T +++ +   +   F+N R+ SE
Sbjct: 15  AKQRKKRNDDSRYVFPKIPADLTREM--ILQHN-VNNTYTSSYSIDYVKKNFLNWRLPSE 71

Query: 101 RVNKLN 106
            V  +N
Sbjct: 72  LVPAMN 77


>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 31   MVYHHNAKYDAKLFRKRVENLHY 53
            +++ H AKYDA+L R      HY
Sbjct: 987  ILHRHGAKYDARLLRSATAGGHY 1009


>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 764

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 50 NLHYVLPQVPSTI-GKSIQGILAYDKTHSTASANITQ 85
          ++  VLP    T+  +SIQ I   DK HS +S ++T+
Sbjct: 29 SIEAVLPSYNGTVLQRSIQEINPCDKNHSISSKHLTE 65


>SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)
          Length = 687

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 26  NINRPMVYHHNAKYDAKLFRKRVENLHYV 54
           N++R M  HH+    A L+R+  E L Y+
Sbjct: 240 NLDRVMEAHHSNSQGAYLYRRGAEMLFYL 268


>SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31)
          Length = 635

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 65  SIQGILAYDKTHSTASANITQGGIWFTFVNLRMKSERVNKLNYDVYI 111
           S + +  Y+K + TA A+ T   +   F+ L  K  RV     DVY+
Sbjct: 451 SAEEVRKYEKRYETALASRTTDALAENFLKLTTKLWRVCHPRADVYL 497


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,901
Number of Sequences: 59808
Number of extensions: 99405
Number of successful extensions: 238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 5
length of query: 113
length of database: 16,821,457
effective HSP length: 73
effective length of query: 40
effective length of database: 12,455,473
effective search space: 498218920
effective search space used: 498218920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)