GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001388-TA|BGIBMGA001388-PA|undefined
         (113 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   4.0  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   4.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   5.2  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    20   6.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    19   9.1  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          19   9.1  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 88  IWFTFVNLRMKSERVNKLN 106
           IWF    ++ K E++NK++
Sbjct: 134 IWFQNRRMKHKKEQMNKVS 152


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 88  IWFTFVNLRMKSERVNKLN 106
           IWF    ++ K E++NK++
Sbjct: 125 IWFQNRRMKHKKEQMNKVS 143


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 32  VYHHNAKYDAK 42
           +Y+H A YD+K
Sbjct: 166 LYNHTANYDSK 176


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 84  TQGGIWFTFVNLRMKSERVNKLNYD 108
           T  G +FTF N+ M+   + + N D
Sbjct: 424 TLTGPFFTFCNVLMEMWNIPRENID 448


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 88  IWFTFVNLRMKSERVNKL 105
           IWF    ++ K E  NK+
Sbjct: 131 IWFQNRRMKFKKEEKNKV 148


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 88  IWFTFVNLRMKSERVNKL 105
           IWF    ++ K E  NK+
Sbjct: 151 IWFQNRRMKFKKEEKNKV 168


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,343
Number of Sequences: 317
Number of extensions: 803
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 113
length of database: 114,650
effective HSP length: 49
effective length of query: 64
effective length of database: 99,117
effective search space:  6343488
effective search space used:  6343488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)