GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001388-TA|BGIBMGA001388-PA|undefined
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   3.8  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    24   5.1  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   6.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   6.7  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    23   8.9  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    23   8.9  

>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 34  HHNAKYDAKLFRKRVENLHYVLPQVPSTIGKS 65
           +HNA     +FR   + + Y+ P+  + +G++
Sbjct: 349 YHNAIVRVNIFRDHRQTIQYISPEDSNVLGQA 380


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 92  FVNLRMKSERVNKLNYDV 109
           FV L +K + V +LNYD+
Sbjct: 534 FVELTLKGKTVGRLNYDM 551


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 20  HLFVGTNINRPMVYHHNAKYDAKLFRKRVENLHY 53
           H+ +   ++  +  ++ AK    + R +V+NLHY
Sbjct: 939 HVQLRIGLDNEISQNNEAKVFLNIIRAKVQNLHY 972


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 58   VPSTIGKSIQGILAYDKTHSTASANITQGGIW 89
            V S IG  +  IL    TH + + N     IW
Sbjct: 2056 VQSAIGNFVSTILTLSNTHPSIAGNPIFNDIW 2087


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 67  QGILAYDKTHSTASANITQGGIWFTFVNLRMKSERVNKLNYDVYIYV 113
           Q I A    H  A+  +   G+W   V+  +KS  ++   + V +Y+
Sbjct: 155 QAISAITGMHVVAAGFLLPLGVWLYTVSGGLKSTFLSDWTHTVIVYI 201


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 57  QVPSTIGKSIQGILAYDKTHSTASANITQGGIWFTF 92
           +VP     S   ++ + K   TAS   T G  W TF
Sbjct: 69  RVPDLSRPSFNEVVGHKKFDETASKGDTFGPSWATF 104


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 450,183
Number of Sequences: 5004
Number of extensions: 15593
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 6
length of query: 113
length of database: 2,362,478
effective HSP length: 64
effective length of query: 49
effective length of database: 2,042,222
effective search space: 100068878
effective search space used: 100068878
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)