GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001388-TA|BGIBMGA001388-PA|undefined
         (113 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447     27   2.6  
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394     27   3.5  
11_01_0458 + 3536162-3537794,3537905-3538272                           26   6.1  
09_02_0614 - 11249705-11249780,11249943-11250011,11251138-11251457     26   6.1  
06_02_0142 + 12261680-12261999,12263126-12263194,12263357-12263432     26   6.1  
05_07_0299 - 29073900-29073984,29074125-29074158,29074269-290743...    26   8.0  
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302...    26   8.0  

>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
          Length = 309

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 35  HNAKYDAKLFRKRVENLHYVL 55
           HNAK+  +++RK  E  HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301


>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
          Length = 1456

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/63 (22%), Positives = 26/63 (41%)

Query: 24  GTNINRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHSTASANI 83
           GT+ N+ ++       D     KR+ ++HY+   +PS     +  +   DK H      +
Sbjct: 242 GTDWNQEILKRIGGHRDKPSSTKRIRDIHYLTGSLPSAFCMLLVQMGGMDKNHPFGIGQM 301

Query: 84  TQG 86
             G
Sbjct: 302 ENG 304


>11_01_0458 + 3536162-3537794,3537905-3538272
          Length = 666

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 42  KLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHSTASANITQGGIWFTFVNLRMKSER 101
           ++F     NLH V+P    ++   IQ  L+Y+  H     +I   G     V+L++ S  
Sbjct: 118 QIFNVLYNNLHGVIPNAIFSLPSLIQVDLSYNNLHGQLPIDI---GNAKQLVSLKLSS-- 172

Query: 102 VNKLNYDV 109
            NKL+ D+
Sbjct: 173 -NKLSGDI 179


>09_02_0614 - 11249705-11249780,11249943-11250011,11251138-11251457
          Length = 154

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 33  YHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHSTASANITQGGIWFTF 92
           +  N  Y +K+FR+R      +  ++   +G+  Q I  + K  S          + FT 
Sbjct: 75  FSENPLYPSKIFRRRFRMSRPLFLRIVEALGQWFQSIYRFPKKKSICRFQ----SVVFTM 130

Query: 93  VNLRMKS 99
           V   MKS
Sbjct: 131 VKESMKS 137


>06_02_0142 + 12261680-12261999,12263126-12263194,12263357-12263432
          Length = 154

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 33  YHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHSTASANITQGGIWFTF 92
           +  N  Y +K+FR+R      +  ++   +G+  Q I  + K  S          + FT 
Sbjct: 75  FSENPLYPSKIFRRRFRMSRPLFLRIVEALGQWFQSIYRFPKKKSICRFQ----SVVFTM 130

Query: 93  VNLRMKS 99
           V   MKS
Sbjct: 131 VKESMKS 137


>05_07_0299 -
           29073900-29073984,29074125-29074158,29074269-29074351,
           29074457-29074607,29074853-29074957,29075099-29075168,
           29075374-29075410,29076732-29076843,29076956-29076983
          Length = 234

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 17  ECGHLFVGTNINRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKT 75
           E  H+      + P++  H    +   +R      HY +P+    +GK +   L  D++
Sbjct: 175 ESSHIAARRAASLPILLSHGRADEVVSYRNAERLGHYTIPEEMDDVGKWLSSRLGLDRS 233


>02_04_0080 -
           19529575-19529643,19529756-19529938,19530061-19530210,
           19530297-19530379,19530497-19530599,19530709-19530918,
           19531023-19531183,19531275-19531351,19531483-19531610,
           19531695-19531935,19532047-19532180,19532261-19532435,
           19532587-19532656,19532746-19532803,19532887-19532994,
           19533088-19533283,19533381-19533727,19534008-19534034,
           19534334-19534336
          Length = 840

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 18  CGHLFVGTNINRPMVYHHNAKYDAK 42
           CG L   TN + P+ Y+  A YD K
Sbjct: 793 CGKLVPSTNKDGPLEYNEYAVYDPK 817


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,041
Number of Sequences: 37544
Number of extensions: 84300
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 7
length of query: 113
length of database: 14,793,348
effective HSP length: 73
effective length of query: 40
effective length of database: 12,052,636
effective search space: 482105440
effective search space used: 482105440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)