GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001388-TA|BGIBMGA001388-PA|undefined
         (113 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical pr...    27   3.1  
U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z77660-2|CAB01176.1|  361|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical ...    27   4.1  
Z22179-17|CAA80171.2|  691|Caenorhabditis elegans Hypothetical p...    26   5.5  
Z22173-3|CAA80127.2|  691|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    25   9.5  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    25   9.5  

>Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical
           protein ZC518.1b protein.
          Length = 480

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 25  TNINRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHSTASANIT 84
           T + R  V  HNAK+  +   +R  +    L ++ S     +Q I  Y+      SAN +
Sbjct: 407 TYLRRVNVSDHNAKHAKQRGLERANSPDKCLSKMRSRSKSELQYIQFYENGKFRTSANGS 466

Query: 85  QGGI 88
           Q G+
Sbjct: 467 QNGV 470


>U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical
          protein C27F2.4 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 8/16 (50%), Positives = 14/16 (87%)

Query: 17 ECGHLFVGTNINRPMV 32
          + GH+FVG +++RPM+
Sbjct: 73 DAGHMFVGVDVSRPML 88


>Z77660-2|CAB01176.1|  361|Caenorhabditis elegans Hypothetical
           protein F38H4.2 protein.
          Length = 361

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 48  VENLHYVLPQVPSTIGKSIQGILAYDKTHSTASAN 82
           ++N +Y+ P +PST   ++  +L  + +H T + N
Sbjct: 214 IQNFNYLNPNLPSTGKMTLNELLLINSSHITLTFN 248


>AC024869-5|AAK68606.3| 1126|Caenorhabditis elegans Hypothetical
           protein Y75B7AL.4a protein.
          Length = 1126

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 49  ENLHYVLPQVPSTIGKSIQGILAYDKTHSTASANIT 84
           +   + LPQ+P    K +  +LA   THS+ S  ++
Sbjct: 912 DETQFKLPQLPMPPKKKVSPLLARQATHSSKSTTLS 947


>Z22179-17|CAA80171.2|  691|Caenorhabditis elegans Hypothetical
           protein F58A4.11 protein.
          Length = 691

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 28  NRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTI 62
           N+  +   +A ++ +LF++ + NL+ V PQ+P  I
Sbjct: 130 NQNTINMMSAAFNQQLFKQTLANLNTVTPQLPVNI 164


>Z22173-3|CAA80127.2|  691|Caenorhabditis elegans Hypothetical
           protein F58A4.11 protein.
          Length = 691

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 28  NRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTI 62
           N+  +   +A ++ +LF++ + NL+ V PQ+P  I
Sbjct: 130 NQNTINMMSAAFNQQLFKQTLANLNTVTPQLPVNI 164


>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 83  ITQGGIWFTFVNLRMKSERVNKLNYDVYI 111
           +T G +WF  VN+ +K  +++  + D  I
Sbjct: 124 VTPGDVWFGLVNMGIKVNQLSDFHQDQII 152


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 83  ITQGGIWFTFVNLRMKSERVNKLNYDVYI 111
           +T G +WF  VN+ +K  +++  + D  I
Sbjct: 124 VTPGDVWFGLVNMGIKVNQLSDFHQDQII 152


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,705
Number of Sequences: 27539
Number of extensions: 78379
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 9
length of query: 113
length of database: 12,573,161
effective HSP length: 72
effective length of query: 41
effective length of database: 10,590,353
effective search space: 434204473
effective search space used: 434204473
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)