Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001388-TA|BGIBMGA001388-PA|undefined
(113 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi... 31 0.24
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 30 0.32
At1g44920.1 68414.m05147 expressed protein 29 0.96
At2g32410.1 68415.m03960 auxin-resistance protein, putative stro... 27 3.9
At4g31600.1 68417.m04489 UDP-glucuronic acid/UDP-N-acetylgalacto... 26 5.1
At1g25380.1 68414.m03150 mitochondrial substrate carrier family ... 26 6.8
At5g50750.1 68418.m06288 reversibly glycosylated polypeptide, pu... 25 9.0
At2g40925.1 68415.m05051 F-box family protein contains F-box dom... 25 9.0
At2g40910.2 68415.m05048 F-box protein-related similar to F-box... 25 9.0
At2g40910.1 68415.m05049 F-box protein-related similar to F-box... 25 9.0
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 25 9.0
At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putati... 25 9.0
>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
protein low similarity to prediabetic NOD sera-reactive
autoantigen [Mus musculus] GI:6670773,
anaphase-promoting complex subunit 7 [Homo sapiens]
GI:6180015; contains Pfam profile PF00515: TPR Domain
Length = 558
Score = 30.7 bits (66), Expect = 0.24
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 41 AKLFRKRVENLHYVLP--QVPSTIGKSIQGILAYDKTHSTASANITQGGIWFTFVNLRMK 98
A+L ++ N+H + +V + IGK+ + I+ ++K S +T + + ++
Sbjct: 236 AELLQRFPNNVHLLTETAKVEAIIGKNDEAIMRFEKVRSIDPYTLTSMDEYAMLLQIKCD 295
Query: 99 SERVNKLNYDV 109
R+NKL +D+
Sbjct: 296 YSRLNKLVHDL 306
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family
protein similar to SP|Q06752 Cysteinyl-tRNA synthetase
(EC 6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 38 KYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTH 76
K + KL+ + ++P P IG + GI AYD +H
Sbjct: 5 KMELKLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSH 43
>At1g44920.1 68414.m05147 expressed protein
Length = 258
Score = 28.7 bits (61), Expect = 0.96
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 66 IQGILAYDKTHSTASANITQGG 87
++G++ +DK ST+S+NIT+ G
Sbjct: 86 LEGVIQFDKPSSTSSSNITKWG 107
>At2g32410.1 68415.m03960 auxin-resistance protein, putative strong
similarity to SP|P42744 Auxin-resistance protein AXR1
{Arabidopsis thaliana}; contains Pfam profile PF00899:
ThiF family
Length = 523
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 27 INRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTIGK 64
IN +YH A+ D +RV+++ + Q PS+I K
Sbjct: 328 INLQKIYHSKAEADFLSMEQRVKSILVKVGQDPSSISK 365
>At4g31600.1 68417.m04489 UDP-glucuronic
acid/UDP-N-acetylgalactosamine transporter-related
contains weak similarity to UDP-glucuronic
acid/UDP-N-acetylgalactosamine transporter (UDP-
GlcA/UDP-GalNAc transporter) (Swiss-Prot:Q9NTN3) [Homo
sapiens]
Length = 323
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 84 TQGGIWFTFVNLRMKSERVNKLNYDV 109
T GG+W+++ R K + KL D+
Sbjct: 293 TAGGVWYSYAKYRQKKAKPAKLMSDL 318
>At1g25380.1 68414.m03150 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 363
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 33 YHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHSTASANITQGG 87
Y +Y AK+ VENL + S+I K I IL Y H A + + G
Sbjct: 197 YEKIKQYMAKMDNTSVENLSPGNVAIASSIAKVIASILTY--PHEVIRAKLQEQG 249
>At5g50750.1 68418.m06288 reversibly glycosylated polypeptide,
putative strong similarity to reversibly glycosylated
polypeptide-1 (AtRGP) [Arabidopsis thaliana] GI:2317729;
contains Pfam profile PF03214: Reversibly glycosylated
polypeptide
Length = 364
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 18 CGHLFVGTNINRPMVYHHNAKYDAKLFRKRVENLHYVLPQVP 59
C HL G P ++H A +K + LH+ VP
Sbjct: 253 CDHLGFGVKTGLPYLWHSKASNPFVNLKKEHKGLHWQEDMVP 294
>At2g40925.1 68415.m05051 F-box family protein contains F-box domain
Pfam:PF00646
Length = 403
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 46 KRVENLHYVLPQVPSTIGKSIQGILAY 72
K+V L P P+T G+SI G++ Y
Sbjct: 209 KKVVPLGNYHPHAPATAGRSIDGVVHY 235
>At2g40910.2 68415.m05048 F-box protein-related similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; similar to F-box protein family, AtFBX8
(GI:20197464) [Arabidopsis thaliana]
Length = 442
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 46 KRVENLHYVLPQVPSTIGKSIQGILAY 72
++V L P PST+G+ I G + Y
Sbjct: 246 RKVRTLESYHPHAPSTVGQFINGSVVY 272
>At2g40910.1 68415.m05049 F-box protein-related similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; similar to F-box protein family, AtFBX8
(GI:20197464) [Arabidopsis thaliana]
Length = 449
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 46 KRVENLHYVLPQVPSTIGKSIQGILAY 72
++V L P PST+G+ I G + Y
Sbjct: 253 RKVRTLESYHPHAPSTVGQFINGSVVY 279
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 53 YVLPQVPSTIGKSIQGILAYD 73
+ LP++ +T+ KS +G+L YD
Sbjct: 392 FPLPKIVTTLQKSSEGLLRYD 412
>At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putative
/ PEP carboxylase, putative (PPC1) strong similarity to
SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
(PEPCASE) {Solanum tuberosum}; contains Pfam profile
PF00311: phosphoenolpyruvate carboxylase
Length = 967
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 32 VYHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHSTASANITQ 85
+Y H+A+Y+ K K++E L VL + G SI ++A +H AN+ +
Sbjct: 60 LYEHSAEYEGKHEPKKLEELGSVLTSLDP--GDSI--VIAKAFSHMLNLANLAE 109
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.137 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,446
Number of Sequences: 28952
Number of extensions: 71921
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 12
length of query: 113
length of database: 12,070,560
effective HSP length: 72
effective length of query: 41
effective length of database: 9,986,016
effective search space: 409426656
effective search space used: 409426656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)
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