Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001387-TA|BGIBMGA001387-PA|undefined
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    30   0.19 
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   3.1  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   5.5  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 29.9 bits (64), Expect = 0.19
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 99  LHCLITPLQFIAAHDRIINAWGHTSPAWQLCIR-W-TTHDTHATFKLSLDSPQTSSSTGD 156
           ++C      F A   +I++  G T+   QL +  W T H  H     +L +P+   STG 
Sbjct: 229 INCQADARSFYAERSKIVHVAGLTNDVTQLELESWFTNHGVHPVALWTLKTPEPYKSTGT 288

Query: 157 NHAAF 161
               F
Sbjct: 289 GFVLF 293


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 36  LTPVLFESRSRGTYFGKIYDKGKIFHRA 63
           L+ ++F  R RG+Y  K +  GK+F RA
Sbjct: 77  LSNLIFLDRERGSYGFKEFGLGKLFIRA 104


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 41  FESRSRGTYFGKIYDKGKIFHRADKSTSLTVVP 73
           FE+RS GT F + +D  K   R   S +L+ +P
Sbjct: 184 FEARSHGTGFDEYFD--KFSQRKTSSNTLSQLP 214


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,335
Number of Sequences: 5004
Number of extensions: 27531
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 3
length of query: 161
length of database: 2,362,478
effective HSP length: 68
effective length of query: 93
effective length of database: 2,022,206
effective search space: 188065158
effective search space used: 188065158
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)