GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001387-TA|BGIBMGA001387-PA|undefined
         (161 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.41 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   2.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.9  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   3.8  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc
          finger protein protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 57 GKIFHRADKSTSLTVVPQQASIAASTGPSQPTHRTSWSYGT 97
          GK FH   KS      PQ A   +ST  S PT RTS S  T
Sbjct: 61 GKGFHPWKKS------PQGAPSPSSTPSSLPTQRTSTSNPT 95


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 61  HRADKSTSLTVVPQQASIAASTGPSQPTHRTSWSYG 96
           H  + +    V+P   + A+S G   P H +S+  G
Sbjct: 96  HNIEITEVAPVLPGNYANASSVGSRNPIHTSSYMTG 131


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 61  HRADKSTSLTVVPQQASIAASTGPSQPTHRTSWSYG 96
           H  + +    V+P   + A+S G   P H +S+  G
Sbjct: 329 HNIEITEVAPVLPGNYANASSVGSRNPIHTSSYMTG 364


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 61  HRADKSTSLTVVPQQASIAASTGPSQPTHRTSWSYG 96
           H  + +    V+P   + A+S G   P H +S+  G
Sbjct: 329 HNIEITEVAPVLPGNYANASSVGSRNPIHTSSYMTG 364


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 10  KVKLAGYYAVEKILKDALYTSITTRVLTPVLF 41
           K   AG++ V+  L   ++ S+T+ ++  + F
Sbjct: 354 KFSAAGFFPVDFTLLGFIFGSVTSYIIISIQF 385


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,558
Number of Sequences: 317
Number of extensions: 1481
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 161
length of database: 114,650
effective HSP length: 52
effective length of query: 109
effective length of database: 98,166
effective search space: 10700094
effective search space used: 10700094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)