GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001387-TA|BGIBMGA001387-PA|undefined
         (161 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482...    31   0.58 
01_06_0173 - 27221738-27221883,27222009-27222197,27222424-272225...    28   4.1  
03_01_0128 + 995103-995174,996500-996606,996909-997041,997127-99...    27   5.4  
01_01_0925 - 7306881-7308486,7308797-7308906                           27   7.2  

>01_05_0461 +
           22446797-22447050,22447171-22447288,22447895-22448217,
           22448908-22449056,22449324-22449463,22449606-22449757,
           22449862-22450021,22450071-22450088
          Length = 437

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 79  AASTGPSQPTHRTSWSYGTQLHCLITPLQFIAAHDRIINAWGHTSPAWQ 127
           A+STG  +P    +W+ G++   L   L F AA+  ++  + +    WQ
Sbjct: 26  ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74


>01_06_0173 -
           27221738-27221883,27222009-27222197,27222424-27222517,
           27222647-27222756,27222849-27222936,27223046-27223279
          Length = 286

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 16  YYAVEKILKDALYTSITTRVLTPVLFESRSRGTYFGKIYDKG-KIFHRADKSTSLTVVPQ 74
           ++AV  IL   L T + T  +   +   R R  +F + +  G  +F   D  T+  +   
Sbjct: 103 HHAVLGILFSVLITGVLTDAIKDAV--GRPRPNFFWRCFPDGIAVF---DNVTTGVICHG 157

Query: 75  QASIAASTGPSQPTHRTSWSY 95
            AS+      S P+  TSWS+
Sbjct: 158 DASVIKEGHKSFPSGHTSWSF 178


>03_01_0128 +
           995103-995174,996500-996606,996909-997041,997127-997270,
           997589-997747,997865-997938,998024-998099,998476-998531,
           998651-998738,998824-998964,999057-999206,999320-999476,
           1001183-1001773,1002673-1003532
          Length = 935

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 38  PVLFESRSRGTYFGKIYDKGKIFHRADKSTSLTVVPQQAS 77
           PV FES+ RG++   +YD    F++ D ++   VV  + S
Sbjct: 177 PVSFESKYRGSHMAHVYD----FYKPDLASEYPVVDGKLS 212


>01_01_0925 - 7306881-7308486,7308797-7308906
          Length = 571

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 62  RADKSTSLTVVPQQASIAASTGPSQPTHRTSWSYGTQLHCLITPLQFIAAHDRIINAW 119
           RA K+ +L   P +  I + T    P HR + S    LH  +  L + A+HD  + AW
Sbjct: 234 RAKKAATL---PAKGGILSFTKRRPPHHRDTVSC-LVLHA-VAGLLYTASHDHTVKAW 286


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,727,870
Number of Sequences: 37544
Number of extensions: 180334
Number of successful extensions: 362
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 4
length of query: 161
length of database: 14,793,348
effective HSP length: 77
effective length of query: 84
effective length of database: 11,902,460
effective search space: 999806640
effective search space used: 999806640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)