Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001387-TA|BGIBMGA001387-PA|undefined
(161 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17604| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_21884| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 28 3.2
SB_53861| Best HMM Match : LIM (HMM E-Value=0.93) 28 3.2
SB_50716| Best HMM Match : WD40 (HMM E-Value=0) 27 7.4
SB_7806| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_4037| Best HMM Match : rve (HMM E-Value=3.4) 27 7.4
SB_34259| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8) 27 9.8
>SB_17604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 18 AVEKILKDALYTSITTRVLTPVLFESRSRGTYFGKIYDKGKIFHRADKSTSLTVVPQQAS 77
AV+++L++ + +I V+ P+L S FG + +I R+ ST VV A+
Sbjct: 58 AVKQLLREGI-PNIYRGVIPPLLQRGTSLSIMFGAYHKFQRILSRSFPSTGTGVVNASAA 116
Query: 78 IAASTGPSQPT 88
+ A T + T
Sbjct: 117 MLAGTAEAMLT 127
>SB_21884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 82 TGPSQPTHRTSWSYGTQLHCLITPLQFIAAHDRIINA 118
TG S P+ + Y TQ+ L T LQ + AH NA
Sbjct: 62 TGSSTPSVSGNTDYSTQIKNLTTELQHLGAHMNFHNA 98
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 73 PQQASIAASTGPSQPTH 89
PQ AS+ S G SQPTH
Sbjct: 548 PQHASVGTSMGQSQPTH 564
>SB_53861| Best HMM Match : LIM (HMM E-Value=0.93)
Length = 968
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 44 RSRGT--YFGKIYDKGKIFHRADKSTSLTVVPQQASI 78
R+RG Y G +GKI R DK + T +P+ I
Sbjct: 252 RNRGASRYLGLTKTRGKILERFDKKLATTAIPRSTRI 288
>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
Length = 494
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 123 SPAWQLCIRWTTHDTHATFKLSLDSPQTSSSTGDN 157
+PA LC+R T F+L D Q SS+ D+
Sbjct: 428 APAGTLCLRTLVEHTGRVFRLQFDDFQIVSSSHDD 462
>SB_7806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 103 ITPLQFIAAHDRIINAWGHTSPAWQLCI-RWTTHDTHATFKLSLDSPQT 150
IT L+ I H +INA W + I R T DTH LD P+T
Sbjct: 3 ITLLKTIDTH-HVINADLDYPRTWDMSITRLKTIDTHHVINADLDYPRT 50
>SB_4037| Best HMM Match : rve (HMM E-Value=3.4)
Length = 390
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 34 RVLTPVLFESRSRGTYFGKIYDK-GKIFHRADKSTSLTVVPQQASIAASTGPSQPTHRTS 92
R + + + SR+ G F K++ K + S T ++ S+ TG ++ T+ S
Sbjct: 2 RSIHNIQYRSRTCGHMFAKLFAKFTNNVREIREQRSRTADVREHSVREQTGTNRLTNGNS 61
Query: 93 WSYGTQLHC 101
+ LHC
Sbjct: 62 YRVTEDLHC 70
>SB_34259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 103 ITPLQFIAAHDRIINAWGHTSPAWQLCI-RWTTHDTHATFKLSLDSPQT 150
IT L+ I H +INA W + I R T DTH LD P+T
Sbjct: 72 ITLLKTIDTH-HVINADLDYPRTWDMSITRLKTIDTHHVINADLDYPRT 119
>SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 111 AHDRIINAWGHTSPAWQLCIR-WTT-HDTHATFKLSLDSPQTSSSTGDN 157
A D +IN W + AW I W T +T T + D+ TG N
Sbjct: 70 AWDTVINTWDTVTNAWDTVINTWDTGTNTRDTVTNARDAVTNMRDTGTN 118
>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
Length = 586
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 83 GPSQPTHRTSWSYGTQLHCLITP 105
GP+QPTH+T S + ITP
Sbjct: 512 GPAQPTHQTVASNTSSFQACITP 534
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.129 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,487,027
Number of Sequences: 59808
Number of extensions: 209832
Number of successful extensions: 470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 11
length of query: 161
length of database: 16,821,457
effective HSP length: 77
effective length of query: 84
effective length of database: 12,216,241
effective search space: 1026164244
effective search space used: 1026164244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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