GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001387-TA|BGIBMGA001387-PA|undefined
         (161 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK096772-1|BAC04860.1|  577|Homo sapiens protein ( Homo sapiens ...    29   9.9  

>AK096772-1|BAC04860.1|  577|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39453 fis, clone PROST2010046, highly similar to
           Homo sapiens secretory mucin MUC6 (MUC6) mRNA. ).
          Length = 577

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 2/135 (1%)

Query: 28  YTSITTRVLTPVLFESRSRGTYFGKIYDKGKIFHRADKSTSLTVVPQQASIAASTGPSQP 87
           +  +T    T + F+  S GT     +       R     +    P  +S  +STGP   
Sbjct: 65  HPEVTPTSTTNITFKHTSTGTRTPVAHTTSASSSRLPTPFTTHSPPTGSSPFSSTGPMTA 124

Query: 88  TH-RTSWSYGTQLHCLIT-PLQFIAAHDRIINAWGHTSPAWQLCIRWTTHDTHATFKLSL 145
           T  +T+ +Y T  H   T P         ++    HT          T+   H+T   ++
Sbjct: 125 TSFQTTTTYPTPSHPQTTLPTHVPPFSTSLVTPSTHTVIITTHTQMATSASIHSTPTGTV 184

Query: 146 DSPQTSSSTGDNHAA 160
             P T  +TG  H A
Sbjct: 185 PPPTTLKATGSTHTA 199


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,290,677
Number of Sequences: 224733
Number of extensions: 928143
Number of successful extensions: 1669
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 1
length of query: 161
length of database: 73,234,838
effective HSP length: 84
effective length of query: 77
effective length of database: 54,357,266
effective search space: 4185509482
effective search space used: 4185509482
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)