Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001387-TA|BGIBMGA001387-PA|undefined
(161 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 31 0.52
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 31 0.52
AF038619-3|AAO91713.1| 126|Caenorhabditis elegans Hypothetical ... 29 1.6
AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical ... 28 2.8
AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical ... 28 2.8
Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical pr... 27 6.4
AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein. 27 6.4
L13200-7|AAA28189.1| 206|Caenorhabditis elegans Prion-like-(q/n... 27 8.5
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 30.7 bits (66), Expect = 0.52
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 74 QQASIAASTGPSQPTHRTSWSYGTQLHCLITPLQFIAAHDRIINAWGHTSPAWQLCIRWT 133
Q +A G S P + SW+ H L A++D+ + W WQ W
Sbjct: 47 QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101
Query: 134 THDTHAT 140
H+ T
Sbjct: 102 AHEASTT 108
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 30.7 bits (66), Expect = 0.52
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 74 QQASIAASTGPSQPTHRTSWSYGTQLHCLITPLQFIAAHDRIINAWGHTSPAWQLCIRWT 133
Q +A G S P + SW+ H L A++D+ + W WQ W
Sbjct: 47 QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101
Query: 134 THDTHAT 140
H+ T
Sbjct: 102 AHEASTT 108
>AF038619-3|AAO91713.1| 126|Caenorhabditis elegans Hypothetical
protein F56A11.7 protein.
Length = 126
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 55 DKG-KIFHRADKSTSLTVVPQQASIAASTGPSQPTHRTSWSYGTQLH 100
+KG + A+ +LT V Q +++ G ++ HR WS GTQLH
Sbjct: 40 EKGASVISNANYFLTLTCVLQDLYLSSCHG-NEYGHRDLWSVGTQLH 85
>AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical
protein D1007.13a protein.
Length = 142
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 73 PQQASIAASTGPSQPTHRTSWSYGTQLHCLITPLQFIAAHDRIINAWGHTSP 124
P + +ST S P +S +YG+ + P F + ++WG T P
Sbjct: 15 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 66
>AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical
protein D1007.13b protein.
Length = 247
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 73 PQQASIAASTGPSQPTHRTSWSYGTQLHCLITPLQFIAAHDRIINAWGHTSP 124
P + +ST S P +S +YG+ + P F + ++WG T P
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 171
>Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical
protein K11D9.1a protein.
Length = 747
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 7 AADKVKLAGYYAVEKILKDALYTSITT---RVLTPVLFESRSRGTYFGKIYDKGKIFHRA 63
+ +++ Y K+L ++ I R+ V+ E +S G + + Y+KG+ +
Sbjct: 44 SGEEISFPWYNVTGKMLVVGMHVEIKRSDGRIHGAVIAEVKSNGRFMVEWYEKGETKGKE 103
Query: 64 DKSTSLTVVPQQASIAASTGPSQPTHRT 91
L + T P QP +T
Sbjct: 104 SSLEELLTLNPSLQAPKPTPPPQPPQKT 131
>AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein.
Length = 747
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 7 AADKVKLAGYYAVEKILKDALYTSITT---RVLTPVLFESRSRGTYFGKIYDKGKIFHRA 63
+ +++ Y K+L ++ I R+ V+ E +S G + + Y+KG+ +
Sbjct: 44 SGEEISFPWYNVTGKMLVVGMHVEIKRSDGRIHGAVIAEVKSNGRFMVEWYEKGETKGKE 103
Query: 64 DKSTSLTVVPQQASIAASTGPSQPTHRT 91
L + T P QP +T
Sbjct: 104 SSLEELLTLNPSLQAPKPTPPPQPPQKT 131
>L13200-7|AAA28189.1| 206|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 96
protein.
Length = 206
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 74 QQASIAASTGPSQPTHRTSWSYGTQLHCLITP 105
QQ P+QPTH SY T L +TP
Sbjct: 64 QQFQSPQQQAPTQPTHPDRESYQTALPANVTP 95
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.129 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,916,040
Number of Sequences: 27539
Number of extensions: 148549
Number of successful extensions: 266
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 8
length of query: 161
length of database: 12,573,161
effective HSP length: 76
effective length of query: 85
effective length of database: 10,480,197
effective search space: 890816745
effective search space used: 890816745
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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