GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001387-TA|BGIBMGA001387-PA|undefined
         (161 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22380.1 68416.m02825 expressed protein                             31   0.49 
At5g45530.1 68418.m05592 expressed protein contains Pfam domain,...    30   0.86 
At1g78090.1 68414.m09100 trehalose-6-phosphate phosphatase (TPPB...    28   2.6  
At4g17310.1 68417.m02599 expressed protein                             27   8.0  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   8.0  

>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 20/53 (37%), Positives = 25/53 (47%)

Query: 42  ESRSRGTYFGKIYDKGKIFHRADKSTSLTVVPQQASIAASTGPSQPTHRTSWS 94
           ES +  T  G ++  G+  HR   STS       ASI AS  P  PT  +S S
Sbjct: 221 ESWASSTTGGGVFASGEQIHRQISSTSPANRVSPASILASPSPPAPTSPSSSS 273


>At5g45530.1 68418.m05592 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 798

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 13  LAGYYAVEKILKDALYTSITTRVLT-PVLFESRSRGTYFGKIYD-KGKIFHRADKSTSLT 70
           LAG YAV + L++ L+  IT   +T  + +  R+R  Y   +   K ++  RAD  ++  
Sbjct: 128 LAGVYAVVQSLENVLWPPITLLFITGTIKYVERTRALYSASLDKFKDRMLQRADAGSNYA 187

Query: 71  VVPQQ-ASIAASTGPSQ 86
            + ++ AS   S  P++
Sbjct: 188 KLMEEFASRKMSNLPTE 204


>At1g78090.1 68414.m09100 trehalose-6-phosphate phosphatase (TPPB)
          identical to trehalose-6-phosphate phosphatase (AtTPPB)
          GI:2944180 [Arabidopsis thaliana]
          Length = 374

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 30 SITTRVLTPVLFESRSRGTYFGKIYDKG-KIFHRADKSTSLTVVPQQASIAASTGPSQPT 88
          +IT  V    LF S S  TYF     K  K+   ADK+ +L V P+  S+  S   S PT
Sbjct: 19 TITVSVSNSPLF-SNSFPTYFNFPRRKLLKLLEAADKN-NLVVAPKITSMIDSMRDSSPT 76

Query: 89 HRTSWSY 95
             S SY
Sbjct: 77 RLRSSSY 83


>At4g17310.1 68417.m02599 expressed protein
          Length = 99

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 9/75 (12%)

Query: 58  KIFHRADKST---SLTVVPQQASIAASTG---PSQPTHRTSWS-YGTQLHCL--ITPLQF 108
           K+F+RA  S+   +L       S A+S G   PSQPT   S+S   ++L C+  + PL  
Sbjct: 7   KLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPTRHFSFSRCPSELGCVQSLLPLHS 66

Query: 109 IAAHDRIINAWGHTS 123
             A  R+ +    TS
Sbjct: 67  TVAAARLTSCLSTTS 81


>At3g47910.1 68416.m05224 expressed protein low similarity to
           nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
           GI:189036; contains Pfam profiles PF04780: Protein of
           unknown function (DUF629), PF04781: Protein of unknown
           function (DUF627)
          Length = 1290

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 117 NAWGHTSPAWQLCIRWTTHDTHATFKLSLDSP 148
           +AW  T+P    C  W  +++    KLS+  P
Sbjct: 478 DAWNDTTPDGDTCNGWNENESEEEVKLSIAFP 509


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.129    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,771,677
Number of Sequences: 28952
Number of extensions: 141346
Number of successful extensions: 270
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 5
length of query: 161
length of database: 12,070,560
effective HSP length: 76
effective length of query: 85
effective length of database: 9,870,208
effective search space: 838967680
effective search space used: 838967680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)