Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001386-TA|BGIBMGA001386-PA|IPR000842|Phosphoribosyl
pyrophosphate synthetase, IPR005946|Ribose-phosphate
pyrophosphokinase, IPR000836|Phosphoribosyltransferase
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 267 1e-71
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 86 4e-17
01_06_0553 + 30173964-30174349,30175124-30175439,30175523-301756... 79 6e-15
02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450... 57 3e-08
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435... 36 0.051
12_02_0962 + 24854731-24854830,24854966-24855076,24855332-248554... 32 0.83
01_03_0197 + 13700225-13700278,13701178-13702422 29 4.4
04_04_0185 - 23403479-23403868,23404018-23404023 29 5.9
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 29 7.8
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 267 bits (654), Expect = 1e-71
Identities = 138/313 (44%), Positives = 201/313 (64%), Gaps = 5/313 (1%)
Query: 47 RMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSG 106
R +K+FSG+++ LAQ+I LG+DLGKV+ K+F++ E V++ ESVRG DV++VQ
Sbjct: 86 RDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPT 145
Query: 107 SGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVS 166
+N+NLMEL +MI+AC+ ASA +T VIP F YAR D+K + R ITAKL AN+L+ +
Sbjct: 146 CSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEA 205
Query: 167 GADHIITMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVT 226
G+D +I D+H++Q G+FDIPVD++ +P +L ++ K +VVSPD GG R
Sbjct: 206 GSDRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTIS-KDLVVVSPDVGGVVRAR 264
Query: 227 SIADRL-NVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIE 285
+ A +L + A++ K R+ N M L+GDVK + AI+VDDM DT GTI AA L +
Sbjct: 265 AFAKKLSDAPLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQ 324
Query: 286 AGATKVYAILTHGIFSGPAISRINNACLEAVVVTNTIPQERHMQEC-PKIQCIDVSMMLA 344
GA VYA TH +FS PAI R++ E V+VTN+I H +C P++ + ++ ++A
Sbjct: 325 EGAEAVYACSTHAVFSPPAIERLSGGIFEEVIVTNSILLPEH--KCFPQLTVLSMANLVA 382
Query: 345 EAVRRTHNGESVS 357
E + H S S
Sbjct: 383 ETIWHVHRDGSSS 395
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 86.2 bits (204), Expect = 4e-17
Identities = 43/89 (48%), Positives = 60/89 (67%)
Query: 107 SGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVS 166
S EI L L IN + ASA +TAVIP F YAR D+K + R I AKLVAN+++ +
Sbjct: 110 SQEIASYLGLELGKINIKRRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEA 169
Query: 167 GADHIITMDLHASQIQGFFDIPVDNLFAE 195
GA+ ++ DLH+SQ G+FDIPVD+++ +
Sbjct: 170 GANRVLVCDLHSSQAMGYFDIPVDHVYGQ 198
Score = 78.2 bits (184), Expect = 1e-14
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 17/123 (13%)
Query: 252 MVLVGDVKDRTAILVDDMADTC----------------GTICHAAEKLIEAGATKVYAIL 295
M L+GDV+ + A+++DDM DT GTI AE L + GA +VYA
Sbjct: 200 MNLIGDVRGKVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQEGAREVYACC 259
Query: 296 THGIFSGPAISRINNACLEAVVVTNTIPQERHMQECPKIQCIDVSMMLAEAVRRTHNGES 355
TH +FS PAI R+++ + V++TNTIP + + P++ + V+ +L E + R H+ S
Sbjct: 260 THAVFSPPAIERLSSGLFQEVIITNTIPLKED-KSFPQLTILSVANLLGETIWRVHDDCS 318
Query: 356 VSY 358
V +
Sbjct: 319 VGH 321
Score = 36.7 bits (81), Expect = 0.029
Identities = 13/31 (41%), Positives = 25/31 (80%)
Query: 51 IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKK 81
+++FSG+++P L+Q+I LG++LGK+ K+
Sbjct: 98 LRIFSGTANPSLSQEIASYLGLELGKINIKR 128
>01_06_0553 +
30173964-30174349,30175124-30175439,30175523-30175618,
30175710-30175778,30175878-30176006,30176165-30176264,
30177321-30177454
Length = 409
Score = 79.0 bits (186), Expect = 6e-15
Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 17/296 (5%)
Query: 17 ATTSGLVSMKSTITLEDVVNKLDHVLPLTTRM---PNIKVFSGSSHPDLAQKIVDRLG-I 72
AT S +VS S I L V V +T + N+ +F +LA+++V R I
Sbjct: 62 ATGSSIVSNASGIHLAAPVLAPLAVPKMTGAVGAHKNVLLFHCEEMRELAEQVVARNDDI 121
Query: 73 DLGKVVTKKFSN--METCVEIGESVRGEDVYIVQSGSGEINDNLMELLIMINACKIASAS 130
+L + + F++ + ++RG+ V + S S + E L +I A S
Sbjct: 122 ELRSISWRTFADGFPNLFISNAHTIRGQHVAFLASFSSP--SVIFEQLSIIYALPKLFIS 179
Query: 131 RVTAVIPCFPYAR----QDKKDKSRAPITAKLVANI-LSVSGADHIITMDLHASQIQGFF 185
T ++P FP +D+ D + A A++++NI +S G ++ D+HA Q + +F
Sbjct: 180 SFTLILPFFPTGTSERMEDEGDVATAFTLARILSNIPISRGGPSSLVIFDIHALQERFYF 239
Query: 186 DIPVDNLFAEPA-VLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHKERK 244
V F +LK + +PD + PD G KR + + +K R+
Sbjct: 240 GDSVLPCFESGIPLLKSRLQELPDSDNITIAFPDDGAWKRFYKQLQHFPM--VVCNKVRE 297
Query: 245 KANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIF 300
+ + GD + R ++VDD+ + GT+ + L E GA KV A +THGIF
Sbjct: 298 GEQRIVR-IKEGDPRGRHVVIVDDLVQSGGTLIECQKVLAEHGAAKVSAYVTHGIF 352
>02_05_0511 +
29644266-29644399,29644502-29644913,29645007-29645075,
29645169-29645333,29645771-29645870,29645906-29646081
Length = 351
Score = 56.8 bits (131), Expect = 3e-08
Identities = 53/232 (22%), Positives = 103/232 (44%), Gaps = 19/232 (8%)
Query: 95 VRGEDVYIVQSGSGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPI 154
+RG+ V + S S + E + +I A + T V+P FP ++ ++
Sbjct: 62 IRGQHVAFLASFSSP--SVIFEQISVIFALPKLFIASFTLVLPFFPTGSFERVEEEGDVA 119
Query: 155 TAKLVANILSV-----SGADHIITMDLHASQIQGFFDIPVDNLFAE--PAVLKWIKENIP 207
TA +A ILS+ G ++ D+HA Q + +F V F P +L+ +++ +P
Sbjct: 120 TAFTLARILSMIPKSRGGPTSVVIYDIHALQERFYFGDDVLPCFETGIPLLLQRLRQ-LP 178
Query: 208 DWKTSIVVSPDAGGAKRVTSIADRLNV---------EFALIHKERKKANEVASMVLVGDV 258
D + PD G KR + + ++ ++ + ++ ++ + G+
Sbjct: 179 DADNITIAFPDDGAWKRFHKLLLNFPMTPSFYFGLFDYKVVCAKVREGDKRIVRIKEGNP 238
Query: 259 KDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGPAISRINN 310
+ R ++VDD+ + GT+ + L GA KV A +TH +F + R +
Sbjct: 239 EGRHVVIVDDLVQSGGTLRECQKVLAAHGAAKVSAYVTHAVFPKQSYERFTH 290
>05_05_0080 -
22243175-22243226,22243342-22243389,22243485-22243540,
22243752-22243819,22244712-22244773,22245166-22245214,
22245818-22245899,22245987-22246064,22246441-22246499,
22246727-22246805,22246946-22247218
Length = 301
Score = 35.9 bits (79), Expect = 0.051
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 264 ILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGPAISRINNACLEAVVVTNTIP 323
++VD M T GTI A + L+E G T + + + PA+ +++N V T TI
Sbjct: 219 LVVDPMLATGGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGTID 278
Query: 324 QE 325
E
Sbjct: 279 SE 280
>12_02_0962 +
24854731-24854830,24854966-24855076,24855332-24855424,
24855538-24855687,24855934-24855992,24856081-24856134
Length = 188
Score = 31.9 bits (69), Expect = 0.83
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 212 SIVVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASM------------VLVGDVK 259
++V +A G +IA + +F + K RK EV S + +G V+
Sbjct: 67 TLVAGIEARGFFFAPTIALEVGAKFVPLRKPRKLPGEVISEEYSLEYGTDKIEMQIGAVE 126
Query: 260 DRT-AILVDDMADTCGTICHAAEKLIEAGATKV 291
AI+VDD+ T GT+C A + L AGA V
Sbjct: 127 PNDRAIIVDDLIATGGTLCAAVKLLERAGAEVV 159
>01_03_0197 + 13700225-13700278,13701178-13702422
Length = 432
Score = 29.5 bits (63), Expect = 4.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 252 MVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGP 303
++LVG V D DD D +C+ AE L+ A + +A++ I + P
Sbjct: 240 VMLVGTVPDPAMASTDDQGDRSAKVCYFAE-LLNATLSVAFAVVVVLITAAP 290
>04_04_0185 - 23403479-23403868,23404018-23404023
Length = 131
Score = 29.1 bits (62), Expect = 5.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 245 KANEVASMVLVGDVKDRTAILVDDMADTCGTIC 277
KA+ V SM + GD +DR ++ D + TC C
Sbjct: 26 KADGVISMAITGDDRDRLEVVGDGVDVTCLVTC 58
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 28.7 bits (61), Expect = 7.8
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 202 IKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHK--ERKKANEVASMVLVGDVK 259
+++ I D K + VSP G + + S+ N + + ++ NE+A +L GD K
Sbjct: 874 VQKRIADRKIKLEVSP--GAVEFLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGDFK 931
Query: 260 DRTAILVD 267
D +ILVD
Sbjct: 932 DEDSILVD 939
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,578,998
Number of Sequences: 37544
Number of extensions: 365789
Number of successful extensions: 922
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 11
length of query: 365
length of database: 14,793,348
effective HSP length: 83
effective length of query: 282
effective length of database: 11,677,196
effective search space: 3292969272
effective search space used: 3292969272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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