GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001386-TA|BGIBMGA001386-PA|IPR000842|Phosphoribosyl
pyrophosphate synthetase, IPR005946|Ribose-phosphate
pyrophosphokinase, IPR000836|Phosphoribosyltransferase
         (365 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-6|AAK29853.1|  377|Caenorhabditis elegans Hypothetical pr...   530   e-151
U00036-5|AAT92064.1|  446|Caenorhabditis elegans Hypothetical pr...   530   e-151
U00036-7|AAK29858.2|  319|Caenorhabditis elegans Hypothetical pr...   528   e-150
U00036-8|AAL06052.1|  318|Caenorhabditis elegans Hypothetical pr...   517   e-147
Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical pr...   212   3e-55
U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical pr...    32   0.74 
U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical pr...    31   1.7  
AL132877-11|CAB60853.1|  214|Caenorhabditis elegans Hypothetical...    30   2.3  
Z80216-3|CAB02280.1|  373|Caenorhabditis elegans Hypothetical pr...    29   6.9  

>U00036-6|AAK29853.1|  377|Caenorhabditis elegans Hypothetical
           protein R151.2a protein.
          Length = 377

 Score =  530 bits (1308), Expect = e-151
 Identities = 250/318 (78%), Positives = 288/318 (90%)

Query: 47  RMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSG 106
           RMPNIKVFSGSSHPDL+ +I +RL +++ K   KKFSN ET VEIGESVRGEDVYI+QS 
Sbjct: 58  RMPNIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSA 117

Query: 107 SGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVS 166
           +GEINDNLMELLIMINACKIAS+ RV AVIP FPYARQDKKDKSRAPI+AKLVAN+LSV+
Sbjct: 118 AGEINDNLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVA 177

Query: 167 GADHIITMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVT 226
           GADHIITMDLHASQIQGFFDIPVDNL+AEPA+LK+IKE+IP+W+TS++VSPDAGGAKRVT
Sbjct: 178 GADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVT 237

Query: 227 SIADRLNVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEA 286
           SIADRLNV+FALIHKE K+ANEV  M LVG V+ + AILVDDMADTCGTIC AA+KL+EA
Sbjct: 238 SIADRLNVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEA 297

Query: 287 GATKVYAILTHGIFSGPAISRINNACLEAVVVTNTIPQERHMQECPKIQCIDVSMMLAEA 346
           GA KVYA   HGIFSGPA++R+N +  EAVVVTNTIPQ+ +M++C KIQCID+SM+LAEA
Sbjct: 298 GADKVYAFCVHGIFSGPALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCIDISMILAEA 357

Query: 347 VRRTHNGESVSYLFSNVP 364
           +RRTHNGESVSYLFS+VP
Sbjct: 358 IRRTHNGESVSYLFSHVP 375


>U00036-5|AAT92064.1|  446|Caenorhabditis elegans Hypothetical
           protein R151.2d protein.
          Length = 446

 Score =  530 bits (1308), Expect = e-151
 Identities = 250/318 (78%), Positives = 288/318 (90%)

Query: 47  RMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSG 106
           RMPNIKVFSGSSHPDL+ +I +RL +++ K   KKFSN ET VEIGESVRGEDVYI+QS 
Sbjct: 127 RMPNIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSA 186

Query: 107 SGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVS 166
           +GEINDNLMELLIMINACKIAS+ RV AVIP FPYARQDKKDKSRAPI+AKLVAN+LSV+
Sbjct: 187 AGEINDNLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVA 246

Query: 167 GADHIITMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVT 226
           GADHIITMDLHASQIQGFFDIPVDNL+AEPA+LK+IKE+IP+W+TS++VSPDAGGAKRVT
Sbjct: 247 GADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVT 306

Query: 227 SIADRLNVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEA 286
           SIADRLNV+FALIHKE K+ANEV  M LVG V+ + AILVDDMADTCGTIC AA+KL+EA
Sbjct: 307 SIADRLNVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEA 366

Query: 287 GATKVYAILTHGIFSGPAISRINNACLEAVVVTNTIPQERHMQECPKIQCIDVSMMLAEA 346
           GA KVYA   HGIFSGPA++R+N +  EAVVVTNTIPQ+ +M++C KIQCID+SM+LAEA
Sbjct: 367 GADKVYAFCVHGIFSGPALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCIDISMILAEA 426

Query: 347 VRRTHNGESVSYLFSNVP 364
           +RRTHNGESVSYLFS+VP
Sbjct: 427 IRRTHNGESVSYLFSHVP 444


>U00036-7|AAK29858.2|  319|Caenorhabditis elegans Hypothetical
           protein R151.2b protein.
          Length = 319

 Score =  528 bits (1303), Expect = e-150
 Identities = 249/317 (78%), Positives = 287/317 (90%)

Query: 48  MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 107
           MPNIKVFSGSSHPDL+ +I +RL +++ K   KKFSN ET VEIGESVRGEDVYI+QS +
Sbjct: 1   MPNIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAA 60

Query: 108 GEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSG 167
           GEINDNLMELLIMINACKIAS+ RV AVIP FPYARQDKKDKSRAPI+AKLVAN+LSV+G
Sbjct: 61  GEINDNLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAG 120

Query: 168 ADHIITMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTS 227
           ADHIITMDLHASQIQGFFDIPVDNL+AEPA+LK+IKE+IP+W+TS++VSPDAGGAKRVTS
Sbjct: 121 ADHIITMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVTS 180

Query: 228 IADRLNVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAG 287
           IADRLNV+FALIHKE K+ANEV  M LVG V+ + AILVDDMADTCGTIC AA+KL+EAG
Sbjct: 181 IADRLNVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEAG 240

Query: 288 ATKVYAILTHGIFSGPAISRINNACLEAVVVTNTIPQERHMQECPKIQCIDVSMMLAEAV 347
           A KVYA   HGIFSGPA++R+N +  EAVVVTNTIPQ+ +M++C KIQCID+SM+LAEA+
Sbjct: 241 ADKVYAFCVHGIFSGPALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCIDISMILAEAI 300

Query: 348 RRTHNGESVSYLFSNVP 364
           RRTHNGESVSYLFS+VP
Sbjct: 301 RRTHNGESVSYLFSHVP 317


>U00036-8|AAL06052.1|  318|Caenorhabditis elegans Hypothetical
           protein R151.2c protein.
          Length = 318

 Score =  517 bits (1276), Expect = e-147
 Identities = 244/312 (78%), Positives = 282/312 (90%)

Query: 53  VFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGEIND 112
           VFSGSSHPDL+ +I +RL +++ K   KKFSN ET VEIGESVRGEDVYI+QS +GEIND
Sbjct: 5   VFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEIND 64

Query: 113 NLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSGADHII 172
           NLMELLIMINACKIAS+ RV AVIP FPYARQDKKDKSRAPI+AKLVAN+LSV+GADHII
Sbjct: 65  NLMELLIMINACKIASSCRVAAVIPAFPYARQDKKDKSRAPISAKLVANMLSVAGADHII 124

Query: 173 TMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRL 232
           TMDLHASQIQGFFDIPVDNL+AEPA+LK+IKE+IP+W+TS++VSPDAGGAKRVTSIADRL
Sbjct: 125 TMDLHASQIQGFFDIPVDNLYAEPAILKYIKESIPNWQTSVIVSPDAGGAKRVTSIADRL 184

Query: 233 NVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVY 292
           NV+FALIHKE K+ANEV  M LVG V+ + AILVDDMADTCGTIC AA+KL+EAGA KVY
Sbjct: 185 NVDFALIHKESKRANEVEKMTLVGSVEGKVAILVDDMADTCGTICMAADKLVEAGADKVY 244

Query: 293 AILTHGIFSGPAISRINNACLEAVVVTNTIPQERHMQECPKIQCIDVSMMLAEAVRRTHN 352
           A   HGIFSGPA++R+N +  EAVVVTNTIPQ+ +M++C KIQCID+SM+LAEA+RRTHN
Sbjct: 245 AFCVHGIFSGPALTRLNASKFEAVVVTNTIPQDENMKKCSKIQCIDISMILAEAIRRTHN 304

Query: 353 GESVSYLFSNVP 364
           GESVSYLFS+VP
Sbjct: 305 GESVSYLFSHVP 316


>Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical
           protein W04G3.5 protein.
          Length = 353

 Score =  212 bits (518), Expect = 3e-55
 Identities = 121/338 (35%), Positives = 194/338 (57%), Gaps = 28/338 (8%)

Query: 53  VFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGEIND 112
           + +G+SHP+LA+ + +RL I LG+      +N ET V+I +SVRG+ V+I+QSGS  +N+
Sbjct: 13  LLTGNSHPELAKMVSERLEIRLGEATVYNKTNRETSVDIKQSVRGKHVFILQSGSKNVNN 72

Query: 113 NLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSGADHII 172
           ++MELL++I ACK + +  +T ++P  PY++Q +  + R+ I  KLVA ++  +GA  ++
Sbjct: 73  DVMELLVLIYACKTSMSKTITVIMPYLPYSKQCRMLR-RSSIAMKLVAEMICKAGASRLV 131

Query: 173 TMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRL 232
           ++DL+  +IQGFF  PVDNL A P  L+ IK NIPD+K +I+V+   G   + TS ADRL
Sbjct: 132 SLDLYKKEIQGFFSCPVDNLRASPFFLQHIKTNIPDYKNAIIVAKSPGVMNKATSYADRL 191

Query: 233 NVEFALIHKERKKANE-------------VASMVLVGDVKDRTAILVDDMADTCGTICHA 279
            +  A+IH E+K   E             V S   +   + +    +  + D  G I   
Sbjct: 192 RLGVAVIHGEQKDEEESGLEDGRQSPPPNVTSYDFLPAQESKQKPPLTVVGDVGGRIAIM 251

Query: 280 AEKLIEAGATKVYA--------------ILTHGIFSGPAISRINNACLEAVVVTNTIPQE 325
            + +I+   + V A              I THG+ S  A + +  + +  V+VTNT+P +
Sbjct: 252 VDDIIDDAQSFVAAAEVLKARGAYKIYVIATHGVLSSDAPALLEASPITEVIVTNTVPHD 311

Query: 326 RHMQECPKIQCIDVSMMLAEAVRRTHNGESVSYLFSNV 363
                C KI+ +DVS+M+ EA+RR  + ES+  LF +V
Sbjct: 312 LQKMRCHKIKTVDVSLMICEAIRRIFHNESMGQLFRDV 349


>U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical
           protein D2024.2 protein.
          Length = 271

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 28  TITLEDVVNKLDHVLPLTTRMPNIKVFSGSSHPDLAQKIVDRL 70
           T T+EDVVN +D +L L   + N+ V   S+   LA   V RL
Sbjct: 115 TETVEDVVNGVDFILKLYPNVSNVLVGGHSAGAHLAMNAVARL 157


>U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical
           protein T28D9.7 protein.
          Length = 982

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 222 AKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAE 281
           ++ +TS   + N  F L+ +     N    M  VGD+K R    VDD+A+    I    E
Sbjct: 472 SRPITSEEKKANQMFFLLDETAFNRNATRYMS-VGDLKSRYGDKVDDVAEEIAVILRIME 530

Query: 282 KLIEAGATKVYAILTHGIFS 301
           KL        Y     G FS
Sbjct: 531 KLWHVFMPDSYIRTMTGDFS 550


>AL132877-11|CAB60853.1|  214|Caenorhabditis elegans Hypothetical
           protein Y105E8B.5 protein.
          Length = 214

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 226 TSIADRLNVEFALI--HKERKKANEVASMVL--VGDVKDRTAILVDDMADTCGTICHAAE 281
           +S  + + V+F  +  ++++    ++  M L  + ++K ++ ++VDD++DT  T+     
Sbjct: 84  SSCPEPMTVDFIRVKSYEDQMSTGQIQIMGLSNLDELKGKSVLVVDDISDTGRTLAKLLS 143

Query: 282 KLIEAGATKVYAIL 295
            L E G  K +  L
Sbjct: 144 TLHETGVEKTWTAL 157


>Z80216-3|CAB02280.1|  373|Caenorhabditis elegans Hypothetical
           protein F10G8.3 protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 221 GAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMA---DTCGTIC 277
           G   V  I  +L  +   I   + K+N+  +   +G ++ R A+   D+A   D     C
Sbjct: 206 GPTEVKDIESQLKFQIRCISIFKDKSNQNPAGFALGSIEGRVAVQYVDVANPKDNFTFKC 265

Query: 278 HAAEKLIEAGATKVYAI 294
           H + +L+  G  ++YA+
Sbjct: 266 HRSAELVN-GFQEIYAV 281


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,044,799
Number of Sequences: 27539
Number of extensions: 306781
Number of successful extensions: 879
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 10
length of query: 365
length of database: 12,573,161
effective HSP length: 82
effective length of query: 283
effective length of database: 10,314,963
effective search space: 2919134529
effective search space used: 2919134529
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)