GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001386-TA|BGIBMGA001386-PA|IPR000842|Phosphoribosyl
pyrophosphate synthetase, IPR005946|Ribose-phosphate
pyrophosphokinase, IPR000836|Phosphoribosyltransferase
         (365 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 35  VNKLDHVLPLTTR-MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNM 85
           V+     +PL  R +PN   F  S H      +   L   +GK+V +KFS +
Sbjct: 218 VHSSSFCIPLPVRVLPN---FPSSGHWQDQMSLPQMLADKIGKMVNQKFSEL 266


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 42  LPLTTRMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETC 88
           LPL  R        G S   LA+K+ DR+ + +  V+T + +    C
Sbjct: 612 LPLNIRWSYPGEEMGGSSGVLAKKVADRVSMLMISVITARHAGEYVC 658


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,471
Number of Sequences: 429
Number of extensions: 3604
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 365
length of database: 140,377
effective HSP length: 59
effective length of query: 306
effective length of database: 115,066
effective search space: 35210196
effective search space used: 35210196
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)