GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001385-TA|BGIBMGA001385-PA|IPR002937|Amine oxidase
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    62   1e-10
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      30   0.80 
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    29   1.1  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    29   1.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   4.3  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   5.6  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   5.6  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   5.6  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   7.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   9.9  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    26   9.9  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   9.9  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   9.9  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 26/239 (10%)

Query: 233 VQVKCTDGSLYAAKSVIVTLPLAVLKETHAQLFSPPLPQDKINSINSLHYCVLDKIYIEF 292
           V +   + +  +   V++ +P+  L  TH   F PPL + K+ +I+  H+  + K+ + F
Sbjct: 551 VNLSFVNETTVSVDKVVICIPMDKLN-THLITFEPPLEEKKLKAIDRCHFTNVKKVILIF 609

Query: 293 TTPWWPKSAGKFVILWQEEDKAKFTKEEHWITEIYGLDPVQHQPNVLLAWIYGKGAEAME 352
            T +W  +   F  L Q+  +     +    T  Y     +H    L  ++  +G + M+
Sbjct: 610 KTQFWEPNISIFGSLPQDSGRNFIFND---CTRFY-----EHP--TLSVFVKVEGIDFMK 659

Query: 353 KVSFDDLKAGI-DKLLSIFK-KKFPVTPVKSVLRSQWASNLLA-RSAYAYRCVATEENGA 409
               DD+  GI  +L  ++K K   + P+++++ S W +N     S+Y    +  EE+ A
Sbjct: 660 D---DDIVNGIVSQLKKVYKPKSEAINPIRTII-SNWENNSYTNHSSYQISNLFLEEDYA 715

Query: 410 SATTLSEPIYHGNGLPLVCFAGEATSYHRHSAVHGAVESGFREAQRLMDSFGKTNVKPN 468
               LSEPI +      V FA EA S     ++ GA +SG   A+ ++ S     V PN
Sbjct: 716 ---ILSEPIDN-----TVFFASEAISQKNSGSIRGAFDSGILAARDVLASLIGNVVLPN 766


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 361 AGIDKLLSIFKKKFPVTPVKSVLRSQWASNLLARSAYAYRCVATEENGASATTLS-EPIY 419
           A + KL  I KK+FP   +K+ L     S L + ++    C+ T+    + TT      +
Sbjct: 74  AFVQKLEQILKKEFPYKNIKTSLFGSTQSLLASNASDIDLCIITDPPQCAPTTCEVSAAF 133

Query: 420 HGNGL-PLVCFA 430
             NGL  +VC +
Sbjct: 134 ARNGLKKVVCIS 145


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 237 CTDGSLYAAKSVIVTLPLAVLKETHAQLFSPPLPQDKINSINSLHYCVLDKIYIEFTTPW 296
           C D S Y    V++    +         FSP LP     +I S+ +    K+ + +   +
Sbjct: 814 CKDNSSYEVDQVVIACSPSHFSSNIE--FSPGLPNFVTENIKSIDFKPGKKVILRYAAAF 871

Query: 297 WPKSAGKFVIL 307
           W K+   F I+
Sbjct: 872 WRKNIRSFGII 882


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 352 EKVSFDDLKAGIDKLLSIFKKKFPVT-PVKSVLRSQWASNLLARSAYA 398
           +K+S + +   IDK L  F++KF  T P+K+   ++ A  + A +A++
Sbjct: 295 KKISEEMISQAIDKNLQEFEEKFQATFPLKAPYDTEKAHQIFAHTAFS 342


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 381  SVLRSQWASNLLARSAYAYRCVATEENGASATTLSEPIYHGNG 423
            +V+ + + +  +  SA A   V++ E   S+T  S PIY G+G
Sbjct: 1457 TVVTTSYYTTSVYTSAPATETVSSTEAPESSTVTSNPIYQGSG 1499


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 216 ECIRWGTSQPSHQISPLVQVKCTDGSLYAAKSVIVTLPLAVLKET 260
           + ++  TS  S Q SPLV  K TD  + +   V++T       ET
Sbjct: 273 QTVKTTTSNASRQPSPLVSSKSTDNIIRSHSPVLLTPQTLSTSET 317


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 320 EHWITEIYGLDPVQHQPNVLLAWIYGKGAEAMEKVSF 356
           +HW T + G   V   P   L +IYGK    + K ++
Sbjct: 503 DHWATSLLGFISVGMIPIPFLFFIYGKKIRGLSKHAY 539


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 344  YGKGAEAMEKVSFDDLKAGIDKLLSIFKKKFPVTPVKSVLRS--QWASNLLAR 394
            YG     ++K SF++LK  + K +++    F V   K   RS  Q A ++ AR
Sbjct: 995  YGSNILMIDKKSFEELKEKVGKCVALLLLHFDVMGTKHAGRSMDQQAGDIPAR 1047


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 117 QSISQFVRNAVNTKETFKQFPRLTRSLLEV----YERNNHLGGQDDPQHGKSLKGLDEHW 172
           Q  + F   A+N K  F     LTRSL  V          L  Q +  H   +  L  H 
Sbjct: 97  QQSTPFTCIALNKKNQFATGSELTRSLASVQLWDVRSEQKLIRQWNDAHNDDITHLQFH- 155

Query: 173 PCEGEFLLNWRGRGYKTLLDVLLNKYPDPNEAIPVQILLN 212
           P + E LL     G  +LLD    +     E  P+  ++N
Sbjct: 156 PKDNELLLTGSVDGLVSLLDTTKEEDSTDPEEDPLLHVIN 195


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 100 ILANIDEEVCKSHKNNVQSISQF 122
           ++AN+  E+C+   N+V SIS+F
Sbjct: 720 LVANVLHEICEKRFNSVVSISRF 742


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 7/32 (21%)

Query: 315 KFTKEEHW------ITEIY-GLDPVQHQPNVL 339
           K+ K++ W      I EIY G+ PV +QPN+L
Sbjct: 251 KYPKKQDWEAALAKIEEIYFGIRPVSNQPNIL 282


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 101 LANIDEEVCKSHKNNVQSISQFVRNAVNTKETFKQFPRLTRSLLEVYERNNHLGGQDDPQ 160
           L  I +EV K  ++   +  Q + N +N  E ++ F  + ++L+E   R+N L G  +P 
Sbjct: 605 LTIIADEVVKFVEHYSSTFDQELLNLIND-EKWQNF--VNKTLVETRNRDNQLLGGLEPS 661

Query: 161 HGKSLKGLDE 170
               L+ +DE
Sbjct: 662 MVGYLEDMDE 671


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 9/43 (20%)

Query: 49  LDIGAAWCHGEKDNIVFELAEPLGLLGRPDPHDSWYVLSNGDL 91
           LD    W H   D +V+E         + DP D  YV+ NG L
Sbjct: 652 LDFAVGWIHLNPDQVVYE---------KNDPSDCVYVVLNGRL 685


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,331
Number of Sequences: 5004
Number of extensions: 97738
Number of successful extensions: 213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 16
length of query: 470
length of database: 2,362,478
effective HSP length: 75
effective length of query: 395
effective length of database: 1,987,178
effective search space: 784935310
effective search space used: 784935310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)