GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001385-TA|BGIBMGA001385-PA|IPR002937|Amine oxidase
         (470 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   2.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   9.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 440 SAVHGAVESGFREAQRLMDSFGKTNVKP 467
           SAV+GA+ +      R+ DS  +T V+P
Sbjct: 592 SAVYGALLTKTNRIARIFDSASRTAVRP 619


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 440 SAVHGAVESGFREAQRLMDSFGKTNVKP 467
           SAV+GA+ +      R+ DS  +T V+P
Sbjct: 682 SAVYGALLTKTNRIARIFDSASRTAVRP 709


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 156 QDDPQHGKSLKGLDEHWPCEGEFLLNWRGRGYKTL 190
           Q   Q  +  +   +HWP E E   +W      TL
Sbjct: 448 QQQQQQQQQQQQQQQHWPMEEEPAASWGSASDVTL 482


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,266
Number of Sequences: 429
Number of extensions: 5825
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 470
length of database: 140,377
effective HSP length: 60
effective length of query: 410
effective length of database: 114,637
effective search space: 47001170
effective search space used: 47001170
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)