Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001385-TA|BGIBMGA001385-PA|IPR002937|Amine oxidase
(470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29720.1 68417.m04232 amine oxidase family protein similar to... 110 2e-24
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do... 87 3e-17
At1g62830.1 68414.m07093 amine oxidase family protein / SWIRM do... 86 4e-17
At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM do... 68 1e-11
At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM do... 64 2e-10
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ... 62 8e-10
At2g43020.1 68415.m05339 amine oxidase family protein similar to... 59 7e-09
At1g65840.1 68414.m07470 amine oxidase family protein similar to... 56 7e-08
At3g59050.1 68416.m06582 amine oxidase family protein similar to... 55 9e-08
At1g51745.1 68414.m05831 expressed protein 32 0.71
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 31 2.2
At1g67110.1 68414.m07635 cytochrome P450, putative similar to Cy... 29 5.0
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ... 29 6.6
At2g17990.1 68415.m02091 expressed protein 29 6.6
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 29 6.6
>At4g29720.1 68417.m04232 amine oxidase family protein similar to
polyamine oxidase isoform-2 [Homo sapiens] GI:16554963;
contains Pfam profile PF01593: amine oxidase,
flavin-containing
Length = 533
Score = 110 bits (264), Expect = 2e-24
Identities = 90/287 (31%), Positives = 141/287 (49%), Gaps = 48/287 (16%)
Query: 209 ILLNKHVECIRWGTSQPSHQISPLVQVKCTDGSLYAAKSVIVTLPLAVLK---ETHAQLF 265
I LN+ V I W +++ V++ +DGS+ A VIVT+ L VLK ET A+LF
Sbjct: 256 IQLNRKVTKIEWQSNE--------VKLHFSDGSVVFADHVIVTVSLGVLKAGIETDAELF 307
Query: 266 SPPLPQDKINSINSLHYCVLDKIYIEFTTPWWPKSAGKFVILWQEEDKAKFTKEEHWITE 325
SPPLP K ++I L Y V++K+++E + +P ++ +E+ + +F K W+
Sbjct: 308 SPPLPDFKSDAIRRLGYGVVNKLFVEMSQRKFPSLQ---LVFDREDSEFRFVKIPWWMRR 364
Query: 326 IYGLDPVQHQPNVLLAWIYGKGAEAMEKVSFDDLKAGIDKLLSIFKKK-------FPVT- 377
+ P+ VLL+W GK A +EK++ +++K + +S K P+T
Sbjct: 365 TATITPIHSNSKVLLSWFAGKEALELEKLTDEEIKDAVMTTISCLTGKEVKNDTAKPLTN 424
Query: 378 ----------PVKSVLRSQWASNLLARSAYAYRCVATEENGASATTLSEP-------IYH 420
+ VL+S+W S+ L R +Y+Y VA +G ++EP +
Sbjct: 425 GSLNDDDEAMKITKVLKSKWGSDPLFRGSYSY--VAVGSSGDDLDAMAEPLPKINKKVGQ 482
Query: 421 GNGLP-------LVCFAGEATSYHRHSAVHGAVESGFREAQRLMDSF 460
NG V FAGEAT +S HGA SG REA RL+ +
Sbjct: 483 VNGHDQAKVHELQVMFAGEATHRTHYSTTHGAYYSGLREANRLLKHY 529
Score = 43.6 bits (98), Expect = 3e-04
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 29 LEAADRIGGRICTIEYGDSTLDIGAAWCHGEKDNIVFELAEPLGLLGRPDP 79
+E RIGGRI T E+ +++GA W HG + V+ +A+ G L +P
Sbjct: 36 VEGGSRIGGRINTSEFSSEKIEMGATWIHGIGGSPVYRIAKETGSLVSDEP 86
>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
domain-containing protein low similarity to polyamine
oxidase isoform-1 [Homo sapiens] GI:14860862; contains
Pfam profiles PF01593: amine oxidase flavin-containing,
PF04433: SWIRM domain
Length = 1265
Score = 86.6 bits (205), Expect = 3e-17
Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 17/227 (7%)
Query: 233 VQVKCTDGSLYAAKSVIVTLPLAVLKETHAQLFSPPLPQDKINSINSLHYCVLDKIYIEF 292
V+V ++G Y +V+VT+PL LK + FSPPLP K SI L + VL+K+ +EF
Sbjct: 875 VRVSTSNGCEYLGDAVLVTVPLGCLKAETIK-FSPPLPDWKYASIKQLGFGVLNKVVLEF 933
Query: 293 TTPWWPKSAGKFVILWQEEDKAKFTKEEHWITEIYGLDPVQHQPNVLLAWIYGKGA-EAM 351
T +W S F +E D + E ++ + + P VL+A + GK A E
Sbjct: 934 PTVFWDDSVDYFGATAEETD----LRGECFM--FWNVKKTVGAP-VLIALVVGKAAFEYT 986
Query: 352 EKVSFDDLKAGIDKLLSIFKKKFPVTPVKSVLRSQWASNLLARSAYAYRCVATEENGASA 411
K + + + L +F PV SV+ + W + + AY+Y VA +G
Sbjct: 987 NKSKSEHVNHAMMVLRKLFGGDLVPDPVASVV-TDWGTEPYSYGAYSY--VAIGASGEDY 1043
Query: 412 TTLSEPIYHGNGLPLVCFAGEATSYHRHSAVHGAVESGFREAQRLMD 458
L P+ + + FAGEAT V GA+ +G REA R++D
Sbjct: 1044 DVLGRPVQN-----CLFFAGEATCKEHPDTVGGAMMTGVREAVRIID 1085
>At1g62830.1 68414.m07093 amine oxidase family protein / SWIRM
domain-containing protein contains Pfam profile: PF01593
Flavin containing amine oxidase
Length = 844
Score = 86.2 bits (204), Expect = 4e-17
Identities = 119/452 (26%), Positives = 191/452 (42%), Gaps = 40/452 (8%)
Query: 17 RKLHDAGLRVLGLEAADRIGGRICT--IEYGDST---LDIGAAWCHGEKDNIVFELAEPL 71
R+L G RVL LE DR GGR+ T ++ GD D+G + G N + LA L
Sbjct: 282 RQLLSMGFRVLVLEGRDRPGGRVKTRKMKGGDGVEAMADVGGSVLTGINGNPLGVLARQL 341
Query: 72 GLLGRPDPHDSWYVLSNGDLAPDATCKEILANID---EEVCKSHKNNVQSISQFVRNAVN 128
GL L NG+LA + +I A+ + + VCK ++ ++
Sbjct: 342 GLPLHKVRDICPLYLPNGELADASVDSKIEASFNKLLDRVCKLRQSMIEENKSVDVPLGE 401
Query: 129 TKETFKQFPRLTRSLLEVYERNNHLGGQDDPQHGKSLKGLD-EHWPCEGEFLLNWRGRGY 187
ETF+ + E + HL + + L L +W + + +
Sbjct: 402 ALETFRLVYGVAEDQQERMLLDWHLANLEYA-NATLLGNLSMAYWDQDDPYEMGGDHCFI 460
Query: 188 KTLLDVLLNKYPDPNEAIPVQILLNKHVECIRWGTSQPSHQISPLVQVKCTDGSLYAAKS 247
++ ++ E +P I VE IR+G++ LV T +
Sbjct: 461 PGGNEIFVHALA---ENLP--IFYGSTVESIRYGSN------GVLVY---TGNKEFHCDM 506
Query: 248 VIVTLPLAVLKETHAQLFSPPLPQDKINSINSLHYCVLDKIYIEFTTPWWPKSAGKFVIL 307
+ T+PL VLK+ + F P LP K +I L + +L+K+ + F +W + F L
Sbjct: 507 ALCTVPLGVLKKGSIE-FYPELPHKKKEAIQRLGFGLLNKVAMLFPCNFWGEEIDTFGRL 565
Query: 308 WQEEDKAKFTKEEHWITEIYGLDPVQHQPNVLLAWIYGKGAEAMEKVS-FDDLKAGIDKL 366
++ T+ E ++ Y V P +L+A + G AE E +S D +K + L
Sbjct: 566 TEDPS----TRGEFFL--FYSYSSVSGGP-LLVALVAGDAAERFETLSPTDSVKRVLQIL 618
Query: 367 LSIFKKKFPVTPVK-SVLRSQWASNLLARSAYAYRCVATEENGASATTLSEPIYHGNGLP 425
I+ K V P L S+W + + +Y+Y VA +G L+E + G
Sbjct: 619 RGIYHPKGIVVPDPVQALCSRWGQDKFSYGSYSY--VAVGSSGDDYDILAESVGDGR--- 673
Query: 426 LVCFAGEATSYHRHSAVHGAVESGFREAQRLM 457
V FAGEAT+ + +HGA SG REA ++
Sbjct: 674 -VFFAGEATNRQYPATMHGAFLSGMREAANIL 704
>At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM
domain-containing protein similar to polyamine oxidase
isoform-1 [Homo sapiens] GI:14860862; contains Pfam
profile:PF01593 Flavin containing amine oxidase
Length = 746
Score = 68.1 bits (159), Expect = 1e-11
Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 22/238 (9%)
Query: 235 VKCTDGS-LYAAKSVIVTLPLAVLKETHAQLFSPPLPQDKINSINSLHYCVLDKIYIEFT 293
V+ GS ++ A ++ T+PL VLK+ + F P LP+ K +I+ L + +L+K+ + F
Sbjct: 384 VEVISGSQIFQADMILCTVPLGVLKKRSIK-FEPELPRRKQAAIDRLGFGLLNKVAMLFP 442
Query: 294 TPWWPKSAGKFVILWQEEDKAKFTKEEHWITEIYGLDPVQHQPNVLLAWIYGKGAEAMEK 353
+ +W F L +++ + E ++ Y V P L+A + G+ A+ E
Sbjct: 443 SVFWGDELDTFGCL----NESSINRGEFFL--FYAYHTVSGGP-ALVALVAGEAAQRFEC 495
Query: 354 VSFDDLKAGI-DKLLSIFKKKFPVTP--VKSVLRSQWASNLLARSAYAYRCVATEENGAS 410
L + KL I+ K V P +++V ++W S+ L+ +Y++ V +G
Sbjct: 496 TEPSVLLHRVLKKLRGIYGPKGVVVPDPIQTVC-TRWGSDPLSYGSYSH--VRVGSSGVD 552
Query: 411 ATTLSEPIYHGNGLPLVCFAGEATSYHRHSAVHGAVESGFREAQRLMD--SFGKTNVK 466
L+E + N L FAGEAT+ + +HGA SG REA +++ ++ ++N+K
Sbjct: 553 YDILAESV--SNRL---FFAGEATTRQHPATMHGAYLSGLREASKILHVANYLRSNLK 605
>At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM
domain-containing protein contains Pfam profile: PF01593
Flavin containing amine oxidase
Length = 789
Score = 64.1 bits (149), Expect = 2e-10
Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 27/256 (10%)
Query: 207 VQILLNKHVECIRWGTSQPSHQISPLVQVKCTDGS-LYAAKSVIVTLPLAVLKETHAQLF 265
V IL K V+ IR+G++ VK T G+ +Y V+ T+PL VLK + F
Sbjct: 391 VPILYEKTVQTIRYGSNG----------VKVTAGNQVYEGDMVLCTVPLGVLKNGSIK-F 439
Query: 266 SPPLPQDKINSINSLHYCVLDKIYIEFTTPWWPKSAGKFVILWQEEDKAKFTKEEHWITE 325
P LPQ K++ I L + +L+K+ + F +W F L ++ + + E ++
Sbjct: 440 VPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNY----RGEFFL-- 493
Query: 326 IYGLDPVQHQPNVLLAWIYGKGAEAMEKVSFDDLKAGIDKLL-SIFKKK-FPVTPVKSVL 383
Y PV +L+A + G+ A E + D + +L I++ + V +
Sbjct: 494 FYSYAPVAGGA-LLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTV 552
Query: 384 RSQWASNLLARSAYAYRCVATEENGASATTLSEPIYHGNGLPLVCFAGEATSYHRHSAVH 443
++W + + +Y+ VA +G L+E + G + FAGEAT+ + +H
Sbjct: 553 CTRWGGDPFSLGSYSN--VAVGASGDDYDILAESVGDGR----LFFAGEATTRRYPATMH 606
Query: 444 GAVESGFREAQRLMDS 459
GA +G REA + S
Sbjct: 607 GAFVTGLREAANMAQS 622
>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
Zea mays
Length = 472
Score = 62.1 bits (144), Expect = 8e-10
Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 21/228 (9%)
Query: 233 VQVKCTDGSLYAAKSVIVTLPLAVLKETHAQLFSPPLPQDKINSINSLHYCVLDKIYIEF 292
V VK DGS+Y A VIV+ + VL ++ F P LP+ K +I V KI+++F
Sbjct: 223 VVVKTEDGSVYEANYVIVSASIGVL-QSDLLSFQPLLPRWKTEAIQKCDVMVYTKIFLKF 281
Query: 293 TTPWWPKSAGKFVILWQEEDKAKFTKEEHWITEIYGLDPVQHQPNVLLAWIYGKGAEAME 352
+WP G+ ++ E + FT +H ++ N+L+ + + ++ +E
Sbjct: 282 PQCFWPCGPGQEFFIYAHEQRGYFTFWQH-------MENAYPGSNILVVTLTNEQSKRVE 334
Query: 353 KVSFDD-LKAGIDKLLSIFKKKFPVTPVKSVLRSQWASNLLARSAYA-YRCVATEENGAS 410
S + +K + L +F P +L +W +N R +Y+ Y ++ +
Sbjct: 335 AQSDQETMKEAMSVLRDMFGATIPY--ATDILVPRWWNNRFQRGSYSNYPMISDNQ---L 389
Query: 411 ATTLSEPIYHGNGLPLVCFAGEATSYHRHSAVHGAVESGFREAQRLMD 458
+ P+ + F GE TS VHG +G ++ L++
Sbjct: 390 LQNIKAPVGR------IFFTGEHTSEKFSGYVHGGYLAGIDTSKSLLE 431
Score = 43.2 bits (97), Expect = 4e-04
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 26 VLGLEAADRIGGRICTIEYGDSTLDIGAAW---CHGEKDNIVFELAEPLGL 73
VL LEA DRIGGRI +GD +++GA W G++ N V+ELA L
Sbjct: 30 VLILEATDRIGGRIHKQNFGDVPVELGAGWIAGVGGKESNPVWELASRFNL 80
>At2g43020.1 68415.m05339 amine oxidase family protein similar to
polyamine oxidase SP:O64411 [Zea mays]; contains Pfam
profile PF01593 amine oxidase, flavin-containing
Length = 490
Score = 58.8 bits (136), Expect = 7e-09
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 26/237 (10%)
Query: 233 VQVKCTDGSLYAAKSVIVTLPLAVLKETHAQLFSPPLPQDKINSINSLHYCVLDKIYIEF 292
V+V +G + A + ++ +PL VLK + F P LP+ K +IN L + +KI + F
Sbjct: 256 VKVTTENGQTFVADAAVIAVPLGVLKSGTIK-FEPKLPEWKQEAINDLGVGIENKIILHF 314
Query: 293 TTPWWPKSAGKFVILWQEEDKAKFTKEEHWITEIYGLDPVQHQPNVLLAWIYGKGAEAME 352
+WPK V+ + + + L P VL+ G+ A+ +E
Sbjct: 315 EKVFWPKVEFLGVV----------AETSYGCSYFLNLHKATGHP-VLVYMPAGQLAKDIE 363
Query: 353 KVSFDDLKAGIDKLLSIFKKKFPVTPVKSVLRSQWASNLLARSAYAYRCVATEENGASAT 412
K+S D+ A +L + + P L S+W S++ + +Y+Y V +
Sbjct: 364 KMS-DEAAANF-AVLQLQRILPDALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHD--LYE 419
Query: 413 TLSEPIYHGNGLPLVCFAGEATSYHRHSAVHGAVESGFREAQ----RLMDSFGKTNV 465
L P+ + + FAGEATS +VHGA +G A+ R+++ +G+ ++
Sbjct: 420 RLRVPVDN------LFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLERYGELDL 470
Score = 47.6 bits (108), Expect = 2e-05
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 17 RKLHDAGLRVLGLEAADRIGGRICTIEYGDSTLDIGAAWCHGE-KDNIVFELAEPLGLLG 75
R L DA +V+ LE+ DRIGGR+ T +D+GA+W HG K+N LA +G LG
Sbjct: 44 RTLQDASFQVMVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKEN---PLAPVIGRLG 100
Query: 76 RP 77
P
Sbjct: 101 LP 102
>At1g65840.1 68414.m07470 amine oxidase family protein similar to
polyamine oxidase SP:O64411 [Zea mays]; contains Pfam
profile PF01593 amine oxidase, flavin-containing
Length = 497
Score = 55.6 bits (128), Expect = 7e-08
Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 233 VQVKCTDGSLYAAKSVIVTLPLAVLKETHAQLFSPPLPQDKINSINSLHYCVLDKIYIEF 292
V V G+ + A +VI+T+P+ VLK Q F P LPQ K ++I+ L +KI + F
Sbjct: 258 VIVAVEGGTNFVADAVIITVPIGVLKANLIQ-FEPELPQWKTSAISGLGVGNENKIALRF 316
Query: 293 TTPWWPKSAGKFVILWQEEDKAKFTKEEHWITEIYGLDPVQHQPNVLLAWIYGKGAEAME 352
+WP E + L P VL+ G A+ +E
Sbjct: 317 DRAFWP----------NVEFLGMVAPTSYACGYFLNLHKATGHP-VLVYMAAGNLAQDLE 365
Query: 353 KVSFDDLKAGIDKLLSIFKKKFPVTP-VKSVLRSQWASNLLARSAYAYRCVATEENGASA 411
K+S D+ A ++ KK FP P L ++W ++ YAY V E+
Sbjct: 366 KLS-DEATANF--VMLQLKKMFPDAPDPAQYLVTRWGTDPNTLGCYAYDVVGMPED--LY 420
Query: 412 TTLSEPIYHGNGLPLVCFAGEATSYHRHSAVHGAVESGFREAQ 454
L EP+ + + F GEA + + HGA +G +Q
Sbjct: 421 PRLGEPVDN------IFFGGEAVNVEHQGSAHGAFLAGVSASQ 457
Score = 45.2 bits (102), Expect = 9e-05
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 17 RKLHDAGLRVLGLEAADRIGGRICTIEYGDSTLDIGAAWCHGEKD-NIVFELAEPLGL-L 74
R L +A +V LE+ DRIGGRI T +D+GA+W HG D N + + LGL L
Sbjct: 45 RNLSEASFKVTVLESRDRIGGRIHTDYSFGCPVDMGASWLHGVSDENPLAPIIRRLGLTL 104
Query: 75 GRPDPHDSWYVLSNGDL 91
R DS +L + DL
Sbjct: 105 YRTSGDDS--ILYDHDL 119
>At3g59050.1 68416.m06582 amine oxidase family protein similar to
polyamine oxidase (EC 1.5.3.11) precursor - Zea mays
[SP|O64411]; contains Pfam profile PF01593 amine
oxidase, flavin-containing
Length = 488
Score = 55.2 bits (127), Expect = 9e-08
Identities = 65/238 (27%), Positives = 105/238 (44%), Gaps = 34/238 (14%)
Query: 233 VQVKCTDGSLYAAKSVIVTLPLAVLKETHAQLFSPPLPQDKINSINSLHYCVLDKIYIEF 292
V+V G + A + ++ LPL VLK F P LPQ K +IN L + +KI + F
Sbjct: 257 VKVTTEKGDTFVADAAVIALPLGVLKSGMIT-FEPKLPQWKQEAINDLGVGIENKIILNF 315
Query: 293 TTPWWPKSAGKFVILWQEEDKAKFTKEEHWITEIYGLDPVQHQPNVLLAWIYGKGAEAME 352
+WP V+ + + + L P VL+ G+ A +E
Sbjct: 316 DNVFWPNVEFLGVV----------AETSYGCSYFLNLHKATSHP-VLVYMPAGQLARDIE 364
Query: 353 KVSFDDLKAGIDKLLSIFKKKFP--VTPVKSVLRSQWASNLLARSAYAYRCVATEENGAS 410
K S D+ A S +K P +P+ + L S+W S++ + +Y+Y V +
Sbjct: 365 KKS-DEAAANF--AFSQLQKILPDASSPI-NYLVSRWGSDINSLGSYSYDIVNKPHD--- 417
Query: 411 ATTLSEPIYHGNGLPL--VCFAGEATSYHRHSAVHGAVESGFREAQ----RLMDSFGK 462
+Y +PL + FAGEATS +VHGA +G A+ R+++ +G+
Sbjct: 418 -------LYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVLERYGE 468
Score = 47.2 bits (107), Expect = 2e-05
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 17 RKLHDAGLRVLGLEAADRIGGRICTIEYGDSTLDIGAAWCHGE-KDNIVFELAEPLGLLG 75
R L DA +V+ LE+ DRIGGR+ T +D+GA+W HG K+N LA +G LG
Sbjct: 45 RTLQDASFQVVVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKEN---PLAAVIGRLG 101
Query: 76 RP 77
P
Sbjct: 102 LP 103
>At1g51745.1 68414.m05831 expressed protein
Length = 635
Score = 32.3 bits (70), Expect = 0.71
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 29 LEAADRIGGRICTIEYGDSTLDIGAAWCHGE-KDNIVF--ELAEPLGLLGRPDPHDSWYV 85
LEA + GR+ + + + G H + DN + ++ P+ LLGR D WY+
Sbjct: 9 LEAINASVGRLVWVRRRNGSWWPGQTLVHDQVPDNSLVGPKVGTPIKLLGRDDVSVDWYI 68
Query: 86 LSNGDLAPDATCKEILANIDEEVCKSHK 113
L N C E I++ S K
Sbjct: 69 LENSKTVKAFRCGEYDTCIEKAKASSSK 96
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 30.7 bits (66), Expect = 2.2
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 138 RLTRSLLEVYERNNHLGGQDDPQHGKSLKGLDEHWPCEGEFLLNWRGRGYKTLLDVLLNK 197
++ R L + + H+ G + P KS L + CEG L N G+K
Sbjct: 112 QMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFK-------EP 164
Query: 198 YPDPNEAIPVQILLNKHVECIRWGTSQPSHQISP-LVQVK--CTDG 240
P +AIP+ + + C G+ + I P L+++K TDG
Sbjct: 165 TPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDG 210
>At1g67110.1 68414.m07635 cytochrome P450, putative similar to
Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
Length = 512
Score = 29.5 bits (63), Expect = 5.0
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 266 SPPLPQDKINSINSLHYCVLDKIYIEFTTPWWPKSAGKFVILWQEEDKAKFTKEEHWITE 325
S L N +S+H+ ++ ++ + + W K GK I+W + E I E
Sbjct: 61 SKMLSHSASNDCSSIHHNIVPRLLPHYVS--WSKQYGKRFIMWNGTEPRLCLTETEMIKE 118
Query: 326 IYGLDPVQHQPNVLLAWIYGKGAE 349
+ +H P +W+ +G +
Sbjct: 119 LL----TKHNPVTGKSWLQQQGTK 138
>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
SP|Q42510 Pattern formation protein EMB30 (GNOM)
{Arabidopsis thaliana}; contains Pfam profile PF01369:
Sec7 domain
Length = 1375
Score = 29.1 bits (62), Expect = 6.6
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 220 WGTSQPSHQISPLVQVKCTDGSLYAAKSVIVTLPLAVLKETHAQLFSPPLP--QDKINSI 277
W T PS +SP ++V +D +A +V ++ L +LK ++F P +D +NSI
Sbjct: 69 WRTIDPSVYLSPFLEVIQSDEIPASATAVALSSILKILK---IEIFDEKTPGAKDAMNSI 125
Query: 278 -NSLHYCVLDK 287
+ + C L+K
Sbjct: 126 VSGITSCRLEK 136
>At2g17990.1 68415.m02091 expressed protein
Length = 338
Score = 29.1 bits (62), Expect = 6.6
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 105 DEEVCKSHKNNVQSISQFVRNAVNTKETFKQFPRLTRSLLEVYER 149
+EE+C+ K +S+ +V N +ET R +++ E++ER
Sbjct: 238 EEELCRV-KREFESLKSYVSTFTNVRETLLSSERQFKTIEELFER 281
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 29.1 bits (62), Expect = 6.6
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 101 LANIDEEVCKSHKNNVQSISQFVRNAVNTKETFKQFPRLTRSLLEVYERNNHLGGQDDPQ 160
+A D + +N+QS Q R + + PRL+ S + ER Q++
Sbjct: 948 VAPFDFAFANASWSNLQSPKQTPRASERNSNAYPADPRLSSSGSVISERIEPFQFQNNSD 1007
Query: 161 HGKSLKGLDEHWPCEGEFLLNWRGRGYKTLL 191
+G S G++ E E++ + Y TL+
Sbjct: 1008 NGSSQTGVNNTNQVEAEWIEQYEPGVYITLV 1038
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.135 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,680,666
Number of Sequences: 28952
Number of extensions: 519507
Number of successful extensions: 1119
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 26
length of query: 470
length of database: 12,070,560
effective HSP length: 84
effective length of query: 386
effective length of database: 9,638,592
effective search space: 3720496512
effective search space used: 3720496512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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