GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001384-TA|BGIBMGA001384-PA|IPR002100|Transcription
factor, MADS-box
         (164 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   9.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   9.1  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        20   9.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 115 IEHHPGLAPSP 125
           I  HPGL+P P
Sbjct: 230 IPPHPGLSPHP 240


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 115 IEHHPGLAPSP 125
           I  HPGL+P P
Sbjct: 122 IPPHPGLSPHP 132


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 114 PIEHHPGLAPSPLQQYH 130
           P++  PG+     Q+YH
Sbjct: 343 PLDSEPGMLKRKRQKYH 359


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,048
Number of Sequences: 317
Number of extensions: 1211
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 164
length of database: 114,650
effective HSP length: 52
effective length of query: 112
effective length of database: 98,166
effective search space: 10994592
effective search space used: 10994592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)