GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001384-TA|BGIBMGA001384-PA|IPR002100|Transcription
factor, MADS-box
         (164 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    57   2e-09
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.2  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.2  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.6  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   5.6  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    24   9.8  

>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 30/89 (33%), Positives = 58/89 (65%), Gaps = 4/89 (4%)

Query: 20  EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLI-QTCLNS---PDPPT 75
           +A EL+ LTG++VM+LV SETG V+TF+T KL+ ++ S  G++LI ++ +N+    +   
Sbjct: 48  KANELALLTGSEVMVLVVSETGLVHTFSTPKLENVVKSPEGQKLITESLINATTDQNESQ 107

Query: 76  TSEQRMAATGFEETELTYNVVDEDMKVRQ 104
            S+ + ++    ++E  Y +  E+M++ +
Sbjct: 108 ASQAKQSSAQLSDSESGYPLDHEEMRISE 136


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 25  STLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQRMAAT 84
           S +TG Q   ++   TG +    T   QPMI   +G +   T    P  P  +  +   T
Sbjct: 412 SQITGFQPQAMMPQRTG-MQPQMTGFQQPMIPQRTGMQPQMTGFQQPMMPQRTGLQPQMT 470

Query: 85  GFEE 88
           GF++
Sbjct: 471 GFQQ 474


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 33  MLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQRMAATGFEETE 90
           ML +  +  H    +TR ++ ++T+ + K  I + +N  D   T    + ATG +  E
Sbjct: 854 MLPMKKKLSHSSASSTRSIKSLLTNANQKH-IHSSINETDDIPTMAAHIVATGQKNKE 910


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)

Query: 60  GKRLIQTCLNSPDPPTTSEQRM 81
           G R ++ CL SPD   T EQR+
Sbjct: 890 GSRAVRACLESPD--VTEEQRV 909


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 64  IQTCLNSPDPPTTSEQRMAA 83
           +Q+C NSP PP +S    A+
Sbjct: 327 LQSCTNSPSPPLSSPASSAS 346


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 71  PDPPTTSEQRMAATGFEETELTYNVVDEDMKVRQLAYAGTAQ 112
           P  P T   ++A+TG+E         DE+ KV  + ++G ++
Sbjct: 270 PPYPVTKLIKLASTGYEYVCNVETDYDENSKVVSIPHSGPSK 311


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,173
Number of Sequences: 5004
Number of extensions: 22473
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 8
length of query: 164
length of database: 2,362,478
effective HSP length: 68
effective length of query: 96
effective length of database: 2,022,206
effective search space: 194131776
effective search space used: 194131776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)