Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001384-TA|BGIBMGA001384-PA|IPR002100|Transcription
factor, MADS-box
(164 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1373 + 26512062-26512270,26513214-26513310,26513798-265139... 33 0.11
03_01_0158 - 1277899-1278012,1278799-1278853,1279458-1279639 33 0.15
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556... 31 0.60
08_02_0762 - 20896191-20896209,20896407-20896480,20897253-208973... 29 1.4
12_02_0015 - 12347800-12348384 29 1.8
10_08_0756 + 20344406-20344590,20345811-20345880,20346229-203462... 29 1.8
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 29 1.8
06_01_0448 - 3162059-3162092,3162636-3162763,3163556-3163597,316... 29 1.8
03_05_1163 - 30847591-30847663,30847909-30848042,30848443-308484... 29 1.8
02_01_0032 + 199224-199535 29 1.8
09_04_0671 + 19358503-19358687,19361294-19361372,19362017-193620... 29 2.4
08_02_1372 + 26500093-26500154,26500733-26500933,26501858-265019... 29 2.4
05_02_0077 - 6374282-6374313,6374448-6374524,6375219-6375478,637... 29 2.4
05_02_0074 - 6351819-6352073,6352601-6352648 29 2.4
04_04_0904 + 29281572-29281753,29283702-29283786,29284190-292842... 29 2.4
02_05_0320 + 27894604-27894785,27895990-27896043,27897544-278976... 29 2.4
12_01_0660 + 5585172-5585356,5585717-5585761,5586942-5587026,558... 28 3.2
03_02_0159 - 6028352-6028430,6028584-6028768 28 3.2
06_03_0187 - 17669618-17669665,17669916-17670065,17672546-17673073 27 5.6
03_01_0613 - 4506521-4506530,4507023-4507261 27 5.6
01_06_1592 + 38495121-38495305,38496378-38496459,38496652-384967... 27 5.6
06_03_0185 - 17651099-17651731 27 7.4
02_05_0629 + 30475493-30475674,30477091-30477125,30477566-304777... 27 7.4
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323... 27 9.8
09_02_0387 - 8375043-8375831,8376483-8376785,8414151-8414273 27 9.8
08_02_1113 - 24384471-24384644,24384740-24384959,24385034-243851... 27 9.8
06_01_0842 + 6383033-6383430,6383548-6383627,6383974-6384085,638... 27 9.8
02_05_0828 + 32057670-32057851,32060054-32060132,32060808-320608... 27 9.8
01_06_0834 + 32302065-32302143,32303136-32303275,32303371-323034... 27 9.8
01_01_1112 + 8808544-8808695,8808818-8808961,8809302-8809380,880... 27 9.8
>08_02_1373 +
26512062-26512270,26513214-26513310,26513798-26513945,
26514301-26514458
Length = 203
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L QV LLV S G +Y FA+
Sbjct: 38 KAYELSVLCDAQVALLVFSPAGRLYEFAS 66
>03_01_0158 - 1277899-1278012,1278799-1278853,1279458-1279639
Length = 116
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT-RKLQPMITS 57
+A+ELS L +V L+V S G +Y FA+ RK++P T+
Sbjct: 31 KAFELSVLCDAEVALIVFSPRGKLYEFASARKIRPEKTA 69
>01_01_0717 -
5559414-5559435,5559589-5559764,5559876-5559917,
5560039-5560080,5560268-5560370,5560466-5560527,
5561638-5561719,5567067-5567353,5568085-5568184,
5568584-5568651,5569819-5569860,5570001-5570032,
5572616-5572652
Length = 364
Score = 30.7 bits (66), Expect = 0.60
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
+AYELS L +V L+V S G +Y +A ++ +
Sbjct: 159 KAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTV 194
>08_02_0762 -
20896191-20896209,20896407-20896480,20897253-20897331,
20899430-20899611
Length = 117
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
+A ELS L +V LLV S T +Y FA+ ++ +I
Sbjct: 31 KARELSILCDAEVGLLVFSSTSRLYDFASSSMKSII 66
>12_02_0015 - 12347800-12348384
Length = 194
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITS 57
+A EL+ LTG V ++V S HVY F + ++ S
Sbjct: 40 KASELALLTGASVAVVVFSPAKHVYAFGHPSVDAVLRS 77
>10_08_0756 +
20344406-20344590,20345811-20345880,20346229-20346291,
20348390-20348521,20348604-20348737,20351245-20351323,
20353050-20353111,20353211-20353310,20353448-20353489,
20353605-20353646,20353959-20354150
Length = 366
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+A+ELS L +V L+V S G +Y FA+
Sbjct: 31 KAFELSVLCDAEVALIVFSPRGRLYEFAS 59
>08_02_1508 + 27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 47 ATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQRMA-ATGFEETELTYNVVDEDMKVRQ 104
+T ++QP T ++ K+ +Q+ LN P ++ ++ + E+ ++ D+ M+V+Q
Sbjct: 1090 STGRVQPTSTEETSKQQLQSGLNKPISSKDGKETVSYGSSATSREMLPSIPDKSMRVQQ 1148
>06_01_0448 -
3162059-3162092,3162636-3162763,3163556-3163597,
3163697-3163738,3163960-3164059,3164132-3164193,
3165085-3165169,3168003-3168187
Length = 225
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L +V L++ S G ++ F+T
Sbjct: 31 KAYELSVLCDAEVALIIFSTRGRLFEFST 59
>03_05_1163 -
30847591-30847663,30847909-30848042,30848443-30848484,
30848613-30848654,30849362-30849461,30849605-30849666,
30851001-30851015,30851098-30851179,30853510-30853694
Length = 244
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQ 79
+AYELS L +V L++ S G +Y F++ + T + +R I ++ P + Q
Sbjct: 31 KAYELSILCDAEVALVLFSHAGRLYQFSSSS-NMLKTLERYQRYIYASQDAAAPTSDEMQ 89
Query: 80 RM 81
++
Sbjct: 90 KI 91
>02_01_0032 + 199224-199535
Length = 103
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+A+ELS L +V L+V S G +Y FA+
Sbjct: 71 KAFELSVLCDAEVALIVFSPRGRLYQFAS 99
>09_04_0671 +
19358503-19358687,19361294-19361372,19362017-19362087,
19362665-19362764,19362836-19362877,19362972-19363013,
19363703-19363801,19364362-19364433
Length = 229
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L +V L++ S G +Y F +
Sbjct: 31 KAYELSVLCDAEVALIIFSNRGKLYEFCS 59
>08_02_1372 +
26500093-26500154,26500733-26500933,26501858-26501936,
26502652-26502752,26503417-26503516,26503893-26503934,
26504026-26504067,26504352-26504509,26504708-26504780
Length = 285
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L +V L++ S G +Y F +
Sbjct: 57 KAYELSVLCDAEVALIIFSNRGKLYEFCS 85
>05_02_0077 -
6374282-6374313,6374448-6374524,6375219-6375478,
6376036-6376278,6376374-6376391
Length = 209
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRK 50
+AYELS L +V L+V S G +Y ++ +
Sbjct: 144 KAYELSVLCDAEVALVVFSSRGRLYEYSNNR 174
>05_02_0074 - 6351819-6352073,6352601-6352648
Length = 100
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRK 50
+AYELS L +V L+V S G +Y ++ +
Sbjct: 56 KAYELSMLCDAEVALIVFSSRGRLYEYSNNR 86
>04_04_0904 +
29281572-29281753,29283702-29283786,29284190-29284251,
29284337-29284436,29285140-29285181,29286542-29286583,
29286743-29286882,29286970-29287066
Length = 249
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L +V L++ S G +Y F +
Sbjct: 31 KAYELSVLCDAEVALIIFSSRGKLYEFGS 59
>02_05_0320 +
27894604-27894785,27895990-27896043,27897544-27897622,
27899559-27899620,27899852-27899951,27901280-27901321,
27901770-27901915,27902092-27902191
Length = 254
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L +V L++ S G +Y F +
Sbjct: 31 KAYELSVLCDAEVALIIFSSRGKLYEFGS 59
>12_01_0660 +
5585172-5585356,5585717-5585761,5586942-5587026,
5587666-5587730,5587887-5587986,5588209-5588250,
5588400-5588441,5588659-5588952
Length = 285
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFA 47
+AYELS L +V L+V S G +Y ++
Sbjct: 31 KAYELSVLCDAEVALIVFSSRGRLYEYS 58
>03_02_0159 - 6028352-6028430,6028584-6028768
Length = 87
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
+AYELS L +V L++ S G ++ F++ + ++
Sbjct: 31 KAYELSLLCDAEVALIIFSGRGRLFEFSSSSCETLV 66
>06_03_0187 -
17669618-17669665,17669916-17670065,17672546-17673073
Length = 241
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
+A E+STL+G + ++ S+ G+V+ F + + ++
Sbjct: 40 KASEISTLSGASIAIVSFSKAGNVFAFGSPSVDAVL 75
>03_01_0613 - 4506521-4506530,4507023-4507261
Length = 82
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQ 52
+A ELS L +V L+V S TG ++ FA+ +++
Sbjct: 50 KAEELSILCDAEVGLVVFSATGKLFQFASTRIR 82
>01_06_1592 +
38495121-38495305,38496378-38496459,38496652-38496716,
38496914-38497013,38497300-38497341,38497486-38497527,
38497651-38497932
Length = 265
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFA 47
+AYEL+ L ++ L+V S G +Y F+
Sbjct: 31 KAYELAILCDAEIALIVFSSRGRLYEFS 58
>06_03_0185 - 17651099-17651731
Length = 210
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTF 46
+A ELSTL G V ++ S G+V+ F
Sbjct: 40 KASELSTLCGASVAVVAFSSAGNVFAF 66
>02_05_0629 +
30475493-30475674,30477091-30477125,30477566-30477724,
30478558-30478568,30479669-30479730,30480166-30480265,
30480495-30480770
Length = 274
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+A ELS L +V L+V S TG +Y F++
Sbjct: 31 KAKELSILCDAEVGLVVFSSTGRLYEFSS 59
>09_03_0125 -
12531409-12531442,12531577-12531668,12531747-12532337,
12532454-12532789,12532899-12533156,12533867-12533971,
12534625-12534702,12535464-12535542,12535649-12535723,
12535828-12535946,12536042-12537106
Length = 943
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 85 GFEETELTYNVVDEDMKVRQLAYAGTAQYPIEHHPGLAPSPLQQYHQ 131
G E++ + +V D++ +VR Y YP+ GL P +H+
Sbjct: 886 GNEKSSICIHVTDDNHRVRLFGYLSKYGYPV----GLGPGASATFHR 928
>09_02_0387 - 8375043-8375831,8376483-8376785,8414151-8414273
Length = 404
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 50 KLQPMITSDSGKRLIQTCLNSPDPPTTSEQRMAATGFEETELTYNVVDEDMKVR 103
K + T D RL+ L + P R T + + TYN ED + R
Sbjct: 129 KARMYYTRDEDLRLVSAWLENSTDPIEGNARKGDTYWRQVADTYNATTEDDRKR 182
>08_02_1113 -
24384471-24384644,24384740-24384959,24385034-24385176,
24385265-24385321,24385476-24385575,24385694-24385755,
24386120-24386138,24386269-24386322,24386441-24386625
Length = 337
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 18 VGEAYELSTLTGTQVMLLVASETGHVYTFATRK 50
+ +AYELS L V LL+ S +G + F+ R+
Sbjct: 29 IKKAYELSVLCDIDVALLMFSPSGRLSHFSGRR 61
>06_01_0842 +
6383033-6383430,6383548-6383627,6383974-6384085,
6384355-6384454,6384682-6384744,6385857-6386011,
6386109-6386286,6386787-6386954
Length = 417
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 18 VGEAYELSTLTGTQVMLLVASETGHVYTFA-TRKLQPMIT 56
+ +AYELS L + LL+ S +G + F+ R+++ ++T
Sbjct: 100 IKKAYELSVLCDIDIALLMFSPSGRLSHFSGRRRIEDVLT 139
>02_05_0828 +
32057670-32057851,32060054-32060132,32060808-32060869,
32060993-32061092,32061169-32061210,32062057-32062098,
32062189-32062343,32063609-32063636
Length = 229
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
+A ELS L V L+V S TG + FA+ + +I
Sbjct: 31 KAEELSVLCDADVALIVFSSTGKLSHFASSSMNEII 66
>01_06_0834 +
32302065-32302143,32303136-32303275,32303371-32303436,
32303867-32303950,32304532-32304699,32305061-32305126,
32306027-32306452
Length = 342
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 71 PDPPTTSEQRMAATGFE-ETELTYNV---VDEDMKVRQLAYAGTAQYPIEHHP 119
P PPT + + AA + + Y V M +Q A +GT++ P++ HP
Sbjct: 197 PKPPTFASEESAARALKKDRHFLYGQWVEVSLAMPKQQNATSGTSKLPVQAHP 249
>01_01_1112 +
8808544-8808695,8808818-8808961,8809302-8809380,
8809477-8809555,8810338-8810377,8810455-8810589,
8810901-8811038,8811596-8811881
Length = 350
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 81 MAATGFEETELTYNVVDEDMKVRQLAYAGTAQYPIEHHPGL 121
+A+ YNVVD+D R +A HPGL
Sbjct: 247 LASMSIRSARRIYNVVDDDPAPRSEVFAFARSLVERKHPGL 287
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,131,701
Number of Sequences: 37544
Number of extensions: 148107
Number of successful extensions: 419
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 30
length of query: 164
length of database: 14,793,348
effective HSP length: 77
effective length of query: 87
effective length of database: 11,902,460
effective search space: 1035514020
effective search space used: 1035514020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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