GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001384-TA|BGIBMGA001384-PA|IPR002100|Transcription
factor, MADS-box
         (164 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45658| Best HMM Match : Sushi (HMM E-Value=0)                      135   2e-32
SB_5544| Best HMM Match : APG9 (HMM E-Value=7e-09)                     31   0.36 
SB_7461| Best HMM Match : Gastrin (HMM E-Value=2.2)                    29   1.9  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    28   4.4  
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      28   4.4  
SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)                  27   7.6  

>SB_45658| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 875

 Score =  135 bits (326), Expect = 2e-32
 Identities = 65/84 (77%), Positives = 74/84 (88%), Gaps = 4/84 (4%)

Query: 20  EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTS-- 77
           +AYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITS+SGK LIQTCLNSPDPP +   
Sbjct: 597 KAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSESGKALIQTCLNSPDPPVSQIP 656

Query: 78  --EQRMAATGFEETELTYNVVDED 99
             +QRM+ATG+EET+LTY V + +
Sbjct: 657 NPDQRMSATGYEETDLTYTVSENE 680


>SB_5544| Best HMM Match : APG9 (HMM E-Value=7e-09)
          Length = 1288

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 73   PPTTSEQRMAATG-FEETELTYNVVDEDMKVRQLAYAGTAQYP-IEHHPGLA 122
            P T S +R   +G FEET LTY   ++  + +++ Y   +  P +  HPGL+
Sbjct: 1200 PSTQSPRRPETSGLFEETGLTYQAREQTFE-QEMTYMARSHGPEVAFHPGLS 1250


>SB_7461| Best HMM Match : Gastrin (HMM E-Value=2.2)
          Length = 312

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 23  ELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQRMA 82
           E+ TLT  + +L+V+  T    T  T+ ++ ++ SD GK        S +P   S++ + 
Sbjct: 42  EIQTLTMMKYLLIVSLVTALAMTAMTQDVRRVLNSDDGK--------SSNPDDQSKEFLG 93

Query: 83  ATGFEETE 90
            TG+ E +
Sbjct: 94  HTGYLEPQ 101


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 5  KPMRIEVYIRISGVGEAYELSTLTGTQVMLLVASETGHV 43
          +P R  VY+  S  G+ + L     T  +L   SE GHV
Sbjct: 41 RPARSSVYLFDSSSGDVFSLYQADPTVPLLFQISEVGHV 79


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 102 VRQLAYAGTAQYPIEHHPGLAPSPLQQYHQH 132
           ++QL Y G  QY   H    +P+P QQY QH
Sbjct: 737 MQQLQYGGPQQYQHPHANTPSPTPHQQY-QH 766


>SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 42  HVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQR--MAATGFEETEL 91
           H    A +++ PM++S  G RL++T     D P T   R  MAA    + EL
Sbjct: 176 HELAAAAKRVTPMVSSMDGNRLLET-----DTPVTVHCRHVMAAKRMSDEEL 222


>SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)
          Length = 955

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 73  PPTTSEQRMAATGFEETELTYNVVDEDMKVRQLAYAGTAQYP 114
           PP T +   A +  + +EL  +V ++  +VR LA+ G    P
Sbjct: 209 PPLTGQYVFALSSDDSSELWLSVDEDPSRVRLLAWIGNRTSP 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,710,687
Number of Sequences: 59808
Number of extensions: 174757
Number of successful extensions: 368
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 7
length of query: 164
length of database: 16,821,457
effective HSP length: 77
effective length of query: 87
effective length of database: 12,216,241
effective search space: 1062812967
effective search space used: 1062812967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)