Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001384-TA|BGIBMGA001384-PA|IPR002100|Transcription
factor, MADS-box
(164 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J03161-1|AAA36647.1| 508|Homo sapiens protein ( Human serum res... 134 2e-31
BC052572-1|AAH52572.1| 508|Homo sapiens serum response factor (... 134 2e-31
BC048211-1|AAH48211.1| 508|Homo sapiens serum response factor (... 134 2e-31
AL355385-5|CAI13785.1| 508|Homo sapiens serum response factor (... 134 2e-31
AL133375-5|CAI20207.1| 508|Homo sapiens serum response factor (... 134 2e-31
AB209128-1|BAD92365.1| 295|Homo sapiens serum response factor (... 134 2e-31
U17838-1|AAC50820.2| 1719|Homo sapiens zinc finger protein RIZ p... 29 7.8
D45132-1|BAA08110.1| 1482|Homo sapiens zinc-finger DNA-binding p... 29 7.8
AL583942-2|CAH70943.1| 1718|Homo sapiens PR domain containing 2,... 29 7.8
AL031277-4|CAI19344.1| 1540|Homo sapiens PR domain containing 2,... 29 7.8
AL031277-3|CAB37643.1| 1481|Homo sapiens PR domain containing 2,... 29 7.8
AL031277-2|CAI19343.1| 1718|Homo sapiens PR domain containing 2,... 29 7.8
AB208877-1|BAD92114.1| 1576|Homo sapiens PR-domain zinc finger p... 29 7.8
>J03161-1|AAA36647.1| 508|Homo sapiens protein ( Human serum
response factor (SRF) mRNA, complete cds. ).
Length = 508
Score = 134 bits (323), Expect = 2e-31
Identities = 65/84 (77%), Positives = 74/84 (88%), Gaps = 4/84 (4%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPP----T 75
+AYELSTLTGTQV+LLVASETGHVYTFATRKLQPMITS++GK LIQTCLNSPD P
Sbjct: 171 KAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDP 230
Query: 76 TSEQRMAATGFEETELTYNVVDED 99
T++QRM+ATGFEET+LTY V + D
Sbjct: 231 TTDQRMSATGFEETDLTYQVSESD 254
>BC052572-1|AAH52572.1| 508|Homo sapiens serum response factor
(c-fos serum response element-binding transcription
facto protein.
Length = 508
Score = 134 bits (323), Expect = 2e-31
Identities = 65/84 (77%), Positives = 74/84 (88%), Gaps = 4/84 (4%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPP----T 75
+AYELSTLTGTQV+LLVASETGHVYTFATRKLQPMITS++GK LIQTCLNSPD P
Sbjct: 171 KAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDP 230
Query: 76 TSEQRMAATGFEETELTYNVVDED 99
T++QRM+ATGFEET+LTY V + D
Sbjct: 231 TTDQRMSATGFEETDLTYQVSESD 254
>BC048211-1|AAH48211.1| 508|Homo sapiens serum response factor
(c-fos serum response element-binding transcription
facto protein.
Length = 508
Score = 134 bits (323), Expect = 2e-31
Identities = 65/84 (77%), Positives = 74/84 (88%), Gaps = 4/84 (4%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPP----T 75
+AYELSTLTGTQV+LLVASETGHVYTFATRKLQPMITS++GK LIQTCLNSPD P
Sbjct: 171 KAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDP 230
Query: 76 TSEQRMAATGFEETELTYNVVDED 99
T++QRM+ATGFEET+LTY V + D
Sbjct: 231 TTDQRMSATGFEETDLTYQVSESD 254
>AL355385-5|CAI13785.1| 508|Homo sapiens serum response factor
(c-fos serum response element-binding transcription
facto protein.
Length = 508
Score = 134 bits (323), Expect = 2e-31
Identities = 65/84 (77%), Positives = 74/84 (88%), Gaps = 4/84 (4%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPP----T 75
+AYELSTLTGTQV+LLVASETGHVYTFATRKLQPMITS++GK LIQTCLNSPD P
Sbjct: 171 KAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDP 230
Query: 76 TSEQRMAATGFEETELTYNVVDED 99
T++QRM+ATGFEET+LTY V + D
Sbjct: 231 TTDQRMSATGFEETDLTYQVSESD 254
>AL133375-5|CAI20207.1| 508|Homo sapiens serum response factor
(c-fos serum response element-binding transcription
facto protein.
Length = 508
Score = 134 bits (323), Expect = 2e-31
Identities = 65/84 (77%), Positives = 74/84 (88%), Gaps = 4/84 (4%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPP----T 75
+AYELSTLTGTQV+LLVASETGHVYTFATRKLQPMITS++GK LIQTCLNSPD P
Sbjct: 171 KAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDP 230
Query: 76 TSEQRMAATGFEETELTYNVVDED 99
T++QRM+ATGFEET+LTY V + D
Sbjct: 231 TTDQRMSATGFEETDLTYQVSESD 254
>AB209128-1|BAD92365.1| 295|Homo sapiens serum response factor
(c-fos serum response element-binding transcription
facto protein.
Length = 295
Score = 134 bits (323), Expect = 2e-31
Identities = 65/84 (77%), Positives = 74/84 (88%), Gaps = 4/84 (4%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPP----T 75
+AYELSTLTGTQV+LLVASETGHVYTFATRKLQPMITS++GK LIQTCLNSPD P
Sbjct: 181 KAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDP 240
Query: 76 TSEQRMAATGFEETELTYNVVDED 99
T++QRM+ATGFEET+LTY V + D
Sbjct: 241 TTDQRMSATGFEETDLTYQVSESD 264
>U17838-1|AAC50820.2| 1719|Homo sapiens zinc finger protein RIZ
protein.
Length = 1719
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 44 YTFATRKLQPMITSDSGKRLIQTCLNSPDPP--TTSEQRMAATGFEETELTYNVVDEDMK 101
+ F + L+P +D K ++ + P+ P T+ E+ EE T ++ +K
Sbjct: 1223 HEFESGTLRPQNFTDPSKAHVEHMQSLPEDPLETSKEEEELNDSSEELYTTIKIMASGIK 1282
Query: 102 VRQL-AYAGTAQYPIEHHPGLAPSPLQQYHQH 132
+ G Q H+P P P Q +H++
Sbjct: 1283 TKDPDVRLGLNQ----HYPSFKPPPFQYHHRN 1310
>D45132-1|BAA08110.1| 1482|Homo sapiens zinc-finger DNA-binding
protein protein.
Length = 1482
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 44 YTFATRKLQPMITSDSGKRLIQTCLNSPDPP--TTSEQRMAATGFEETELTYNVVDEDMK 101
+ F + L+P +D K ++ + P+ P T+ E+ EE T ++ +K
Sbjct: 1022 HEFESGTLRPQNFTDPSKAHVEHMQSLPEDPLETSKEEEELNDSSEELYTTIKIMASGIK 1081
Query: 102 VRQL-AYAGTAQYPIEHHPGLAPSPLQQYHQH 132
+ G Q H+P P P Q +H++
Sbjct: 1082 TKDPDVRLGLNQ----HYPSFKPPPFQYHHRN 1109
>AL583942-2|CAH70943.1| 1718|Homo sapiens PR domain containing 2, with
ZNF domain protein.
Length = 1718
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 44 YTFATRKLQPMITSDSGKRLIQTCLNSPDPP--TTSEQRMAATGFEETELTYNVVDEDMK 101
+ F + L+P +D K ++ + P+ P T+ E+ EE T ++ +K
Sbjct: 1222 HEFESGTLRPQNFTDPSKAHVEHMQSLPEDPLETSKEEEELNDSSEELYTTIKIMASGIK 1281
Query: 102 VRQL-AYAGTAQYPIEHHPGLAPSPLQQYHQH 132
+ G Q H+P P P Q +H++
Sbjct: 1282 TKDPDVRLGLNQ----HYPSFKPPPFQYHHRN 1309
>AL031277-4|CAI19344.1| 1540|Homo sapiens PR domain containing 2, with
ZNF domain protein.
Length = 1540
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 44 YTFATRKLQPMITSDSGKRLIQTCLNSPDPP--TTSEQRMAATGFEETELTYNVVDEDMK 101
+ F + L+P +D K ++ + P+ P T+ E+ EE T ++ +K
Sbjct: 1080 HEFESGTLRPQNFTDPSKAHVEHMQSLPEDPLETSKEEEELNDSSEELYTTIKIMASGIK 1139
Query: 102 VRQL-AYAGTAQYPIEHHPGLAPSPLQQYHQH 132
+ G Q H+P P P Q +H++
Sbjct: 1140 TKDPDVRLGLNQ----HYPSFKPPPFQYHHRN 1167
>AL031277-3|CAB37643.1| 1481|Homo sapiens PR domain containing 2, with
ZNF domain protein.
Length = 1481
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 44 YTFATRKLQPMITSDSGKRLIQTCLNSPDPP--TTSEQRMAATGFEETELTYNVVDEDMK 101
+ F + L+P +D K ++ + P+ P T+ E+ EE T ++ +K
Sbjct: 1021 HEFESGTLRPQNFTDPSKAHVEHMQSLPEDPLETSKEEEELNDSSEELYTTIKIMASGIK 1080
Query: 102 VRQL-AYAGTAQYPIEHHPGLAPSPLQQYHQH 132
+ G Q H+P P P Q +H++
Sbjct: 1081 TKDPDVRLGLNQ----HYPSFKPPPFQYHHRN 1108
>AL031277-2|CAI19343.1| 1718|Homo sapiens PR domain containing 2, with
ZNF domain protein.
Length = 1718
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 44 YTFATRKLQPMITSDSGKRLIQTCLNSPDPP--TTSEQRMAATGFEETELTYNVVDEDMK 101
+ F + L+P +D K ++ + P+ P T+ E+ EE T ++ +K
Sbjct: 1222 HEFESGTLRPQNFTDPSKAHVEHMQSLPEDPLETSKEEEELNDSSEELYTTIKIMASGIK 1281
Query: 102 VRQL-AYAGTAQYPIEHHPGLAPSPLQQYHQH 132
+ G Q H+P P P Q +H++
Sbjct: 1282 TKDPDVRLGLNQ----HYPSFKPPPFQYHHRN 1309
>AB208877-1|BAD92114.1| 1576|Homo sapiens PR-domain zinc finger
protein 2 variant protein.
Length = 1576
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 44 YTFATRKLQPMITSDSGKRLIQTCLNSPDPP--TTSEQRMAATGFEETELTYNVVDEDMK 101
+ F + L+P +D K ++ + P+ P T+ E+ EE T ++ +K
Sbjct: 1080 HEFESGTLRPQNFTDPSKAHVEHMQSLPEDPLETSKEEEELNDSSEELYTTIKIMASGIK 1139
Query: 102 VRQL-AYAGTAQYPIEHHPGLAPSPLQQYHQH 132
+ G Q H+P P P Q +H++
Sbjct: 1140 TKDPDVRLGLNQ----HYPSFKPPPFQYHHRN 1167
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.315 0.131 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,494,092
Number of Sequences: 224733
Number of extensions: 817667
Number of successful extensions: 1661
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1649
Number of HSP's gapped (non-prelim): 13
length of query: 164
length of database: 73,234,838
effective HSP length: 84
effective length of query: 80
effective length of database: 54,357,266
effective search space: 4348581280
effective search space used: 4348581280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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