GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001384-TA|BGIBMGA001384-PA|IPR002100|Transcription
factor, MADS-box
         (164 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75710-1|CAB00023.1|  327|Caenorhabditis elegans Hypothetical pr...    93   9e-20
Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical pr...    31   0.31 
U41014-2|AAK32945.1|  182|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   3.8  
BX677430-1|CAI79176.1|  340|Caenorhabditis elegans Hypothetical ...    28   3.8  
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z79758-1|CAB61037.1|  340|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U56081-1|AAB37243.1|  346|Caenorhabditis elegans T-BOX 12 protein.     27   8.8  
U36199-1|AAA79337.1|  340|Caenorhabditis elegans CeMEF-2 protein.      27   8.8  
U36198-1|AAA79336.1|  340|Caenorhabditis elegans CeMef-2 protein.      27   8.8  
AJ252168-1|CAB65731.1|  346|Caenorhabditis elegans T-box DNA bin...    27   8.8  
AF025468-3|AAF02176.1|  346|Caenorhabditis elegans Male abnormal...    27   8.8  

>Z75710-1|CAB00023.1|  327|Caenorhabditis elegans Hypothetical
           protein D1081.2 protein.
          Length = 327

 Score = 93.1 bits (221), Expect = 9e-20
 Identities = 42/52 (80%), Positives = 50/52 (96%)

Query: 20  EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSP 71
           +A+ELSTLTGTQVMLLVASETGHVYT+AT KLQPMI+SD+GK +IQ+CLN+P
Sbjct: 75  KAFELSTLTGTQVMLLVASETGHVYTYATPKLQPMISSDTGKAMIQSCLNAP 126


>Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical
           protein D2089.3 protein.
          Length = 268

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 19/72 (26%), Positives = 32/72 (44%)

Query: 34  LLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQRMAATGFEETELTY 93
           L V  ET  ++T   ++ +P  ++          +N P  P+TSE   A T  E+ +L  
Sbjct: 98  LCVIYETVSIHTDLEKQRKPASSNSLPSDFPDISMNEPQQPSTSENATAVTSEEQPQLID 157

Query: 94  NVVDEDMKVRQL 105
             +D +  V  L
Sbjct: 158 PFIDFECHVCHL 169


>U41014-2|AAK32945.1|  182|Caenorhabditis elegans Hypothetical
           protein C06G1.2 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 23  ELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGK-RLIQTCLNSPDPPTTSEQRM 81
           E+ T   T+    VA  T    T  T       T+++       T   + + P T+ + +
Sbjct: 65  EVETTPTTEATTTVAETTTEAETTTTTVESTTTTTEATTTEAATTTTTTTEEPATTTKEI 124

Query: 82  AATGFEETELT-YNVVDED----MKVRQLAYAGTAQYPIEHHPG 120
             T     E T    VDE+     K   LA      +P +HHPG
Sbjct: 125 TTTEIVIAETTPTEEVDEESFLGFKKPDLATIYRRLFPFQHHPG 168


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 15   ISGVGEAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPP 74
            IS    A   S+ TG+ V +  +S +G V T +    QP +++  G     T ++S   P
Sbjct: 1700 ISESSTAASASSQTGSTVTMGSSSTSG-VSTSSASSGQPQMSTSQGSSAGSTVVSSTASP 1758

Query: 75   TTSEQRMAATG 85
              S    ++TG
Sbjct: 1759 AASSTAPSSTG 1769


>BX677430-1|CAI79176.1|  340|Caenorhabditis elegans Hypothetical
           protein VB0395L.1 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 55  ITSDSGKRLIQTCLNSPDPP 74
           +TS SG R +  CL+SPD P
Sbjct: 187 VTSSSGLRYLMPCLDSPDFP 206


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 105 LAYAGTAQYPIEHHPGLAPSPLQQ 128
           L+ A   Q+P +HHP L P P+ Q
Sbjct: 339 LSSAPPFQHPQQHHPQLPPPPVHQ 362


>Z79758-1|CAB61037.1|  340|Caenorhabditis elegans Hypothetical
          protein W10D5.1 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
          +AYELS L   ++ L+V + T  ++ +A+  +  ++
Sbjct: 31 KAYELSVLCDCEIALIVFNSTNKLFQYASTDMDKVL 66


>U56081-1|AAB37243.1|  346|Caenorhabditis elegans T-BOX 12 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 71  PDPPTTSEQRMA-ATGFEETELTYNVVDE 98
           PD P T +Q +     FE+T+LT N VD+
Sbjct: 164 PDSPFTGDQLLKHVISFEKTKLTNNEVDK 192


>U36199-1|AAA79337.1|  340|Caenorhabditis elegans CeMEF-2 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
          +AYELS L   ++ L+V + T  ++ +A+  +  ++
Sbjct: 31 KAYELSVLCDCEIALIVFNSTNKLFQYASTDMDKVL 66


>U36198-1|AAA79336.1|  340|Caenorhabditis elegans CeMef-2 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
          +AYELS L   ++ L+V + T  ++ +A+  +  ++
Sbjct: 31 KAYELSVLCDCEIALIVFNSTNKLFQYASTDMDKVL 66


>AJ252168-1|CAB65731.1|  346|Caenorhabditis elegans T-box DNA
           binding protein protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 71  PDPPTTSEQRMA-ATGFEETELTYNVVDE 98
           PD P T +Q +     FE+T+LT N VD+
Sbjct: 164 PDSPFTGDQLLKHVISFEKTKLTNNEVDK 192


>AF025468-3|AAF02176.1|  346|Caenorhabditis elegans Male abnormal
           protein 9 protein.
          Length = 346

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 71  PDPPTTSEQRMA-ATGFEETELTYNVVDE 98
           PD P T +Q +     FE+T+LT N VD+
Sbjct: 164 PDSPFTGDQLLKHVISFEKTKLTNNEVDK 192


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,474,645
Number of Sequences: 27539
Number of extensions: 130684
Number of successful extensions: 369
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 13
length of query: 164
length of database: 12,573,161
effective HSP length: 76
effective length of query: 88
effective length of database: 10,480,197
effective search space: 922257336
effective search space used: 922257336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)