Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001384-TA|BGIBMGA001384-PA|IPR002100|Transcription
factor, MADS-box
(164 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42830.2 68415.m05303 agamous-like MADS box protein AGL5 / fl... 36 0.010
At2g42830.1 68415.m05302 agamous-like MADS box protein AGL5 / fl... 36 0.010
At3g58780.1 68416.m06551 agamous-like MADS box protein AGL1 / sh... 35 0.024
At4g37940.1 68417.m05364 MADS-box family protein MADS-box protei... 34 0.054
At2g45660.1 68415.m05677 MADS-box protein (AGL20) 34 0.054
At4g09960.2 68417.m01630 MADS-box protein (AGL11) 33 0.072
At4g09960.1 68417.m01629 MADS-box protein (AGL11) 33 0.072
At5g62165.2 68418.m07803 MADS-box protein (AGL42) 33 0.095
At5g62165.1 68418.m07802 MADS-box protein (AGL42) 33 0.095
At2g45650.1 68415.m05676 MADS-box protein (AGL6) 30 0.89
At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ... 29 1.2
At4g18960.1 68417.m02793 floral homeotic protein AGAMOUS (AG) co... 29 1.2
At4g11880.1 68417.m01889 MADS-box protein (AGL14) nearly identic... 29 1.5
At3g57390.1 68416.m06388 MADS-box protein (AGL18) agamous-like p... 29 1.5
At3g02310.1 68416.m00213 developmental protein SEPALLATA2 / flor... 29 1.5
At2g03710.3 68415.m00329 MADS-box protein (AGL3) 29 1.5
At2g03710.2 68415.m00331 MADS-box protein (AGL3) 29 1.5
At2g03710.1 68415.m00330 MADS-box protein (AGL3) 29 1.5
At5g15800.1 68418.m01848 developmental protein SEPALLATA1 / flor... 29 2.0
At2g22540.1 68415.m02673 short vegetative phase protein (SVP) id... 29 2.0
At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly simila... 29 2.0
At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly simila... 29 2.0
At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box trans... 28 2.7
At1g24120.1 68414.m03043 DNAJ heat shock protein, putative simil... 28 2.7
At3g61120.1 68416.m06840 MADS-box protein (AGL13) 28 3.6
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 28 3.6
At5g10140.1 68418.m01174 MADS-box protein flowering locus F (FLF... 27 6.2
At5g65070.1 68418.m08185 MADS-box protein (MAF4) contains Pfam p... 27 8.3
At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase fami... 27 8.3
At3g57940.1 68416.m06458 expressed protein contains Pfam profile... 27 8.3
At1g70880.1 68414.m08177 Bet v I allergen family protein similar... 27 8.3
>At2g42830.2 68415.m05303 agamous-like MADS box protein AGL5 /
floral homeodomain transcription factor (AGL5) identical
to SP|P29385 Agamous-like MADS box protein AGL5
{Arabidopsis thaliana}
Length = 248
Score = 36.3 bits (80), Expect = 0.010
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQ 79
+AYELS L +V L++ S G +Y +A ++ I +R + C ++ +PPT +E
Sbjct: 46 KAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTI-----ERYKKACSDAVNPPTITEA 100
Query: 80 RMAATGFEETELTYNVVD 97
E ++L + D
Sbjct: 101 NTQYYQQEASKLRRQIRD 118
>At2g42830.1 68415.m05302 agamous-like MADS box protein AGL5 /
floral homeodomain transcription factor (AGL5) identical
to SP|P29385 Agamous-like MADS box protein AGL5
{Arabidopsis thaliana}
Length = 246
Score = 36.3 bits (80), Expect = 0.010
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQ 79
+AYELS L +V L++ S G +Y +A ++ I +R + C ++ +PPT +E
Sbjct: 46 KAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTI-----ERYKKACSDAVNPPTITEA 100
Query: 80 RMAATGFEETELTYNVVD 97
E ++L + D
Sbjct: 101 NTQYYQQEASKLRRQIRD 118
>At3g58780.1 68416.m06551 agamous-like MADS box protein AGL1 /
shatterproof 1 (AGL1) (SHP1) identical to SP|P29381
Agamous-like MADS box protein AGL1 (Protein Shatterproof
1) {Arabidopsis thaliana}
Length = 248
Score = 35.1 bits (77), Expect = 0.024
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQ 79
+AYELS L +V L++ S G +Y +A ++ I +R + C ++ +PP+ +E
Sbjct: 46 KAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTI-----ERYKKACSDAVNPPSVTEA 100
Query: 80 RMAATGFEETELTYNVVD 97
E ++L + D
Sbjct: 101 NTQYYQQEASKLRRQIRD 118
>At4g37940.1 68417.m05364 MADS-box family protein MADS-box protein
AGL17 - Arabidopsis thaliana, PID:g862648; identical to
cDNA MADS-box protein AGL21 GI:18478602
Length = 228
Score = 33.9 bits (74), Expect = 0.054
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 18 VGEAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTS 77
+ +A EL+ L +V L++ S TG +Y FA+ ++ +I + ++ Q L +P
Sbjct: 29 IKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPASEVKF 88
Query: 78 EQRMAA 83
QR AA
Sbjct: 89 WQREAA 94
>At2g45660.1 68415.m05677 MADS-box protein (AGL20)
Length = 214
Score = 33.9 bits (74), Expect = 0.054
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQ 79
+A+ELS L +V L++ S G +Y FA+ +Q D+ R ++ + SE+
Sbjct: 31 KAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQ-----DTIDRYLRHTKDRVSTKPVSEE 85
Query: 80 RMAATGFEETELTYNVVDEDMKVRQLAYAGTAQYPIE 116
M +E + + + R+L G IE
Sbjct: 86 NMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIE 122
>At4g09960.2 68417.m01630 MADS-box protein (AGL11)
Length = 216
Score = 33.5 bits (73), Expect = 0.072
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQ 79
+AYELS L +V L+V S G +Y +A ++ I +R + C +S + T E
Sbjct: 31 KAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTI-----ERYKKACSDSTNTSTVQEI 85
Query: 80 RMAATGFEETELTYNV 95
A E +L +
Sbjct: 86 NAAYYQQESAKLRQQI 101
>At4g09960.1 68417.m01629 MADS-box protein (AGL11)
Length = 230
Score = 33.5 bits (73), Expect = 0.072
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQ 79
+AYELS L +V L+V S G +Y +A ++ I +R + C +S + T E
Sbjct: 31 KAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTI-----ERYKKACSDSTNTSTVQEI 85
Query: 80 RMAATGFEETELTYNV 95
A E +L +
Sbjct: 86 NAAYYQQESAKLRQQI 101
>At5g62165.2 68418.m07803 MADS-box protein (AGL42)
Length = 210
Score = 33.1 bits (72), Expect = 0.095
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
+AYELS L Q+ L++ S+ G +Y F++ +Q I
Sbjct: 31 KAYELSVLCDAQLSLIIFSQRGRLYEFSSSDMQKTI 66
>At5g62165.1 68418.m07802 MADS-box protein (AGL42)
Length = 210
Score = 33.1 bits (72), Expect = 0.095
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
+AYELS L Q+ L++ S+ G +Y F++ +Q I
Sbjct: 31 KAYELSVLCDAQLSLIIFSQRGRLYEFSSSDMQKTI 66
>At2g45650.1 68415.m05676 MADS-box protein (AGL6)
Length = 252
Score = 29.9 bits (64), Expect = 0.89
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSE 78
+AYELS L +V L++ S G +Y F + ++ T + R L++ P T++
Sbjct: 31 KAYELSVLCDAEVALIIFSSRGKLYEFGSVGIES--TIERYNRCYNCSLSNNKPEETTQ 87
>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain);
Length = 211
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
+A+ELS L QV ++ S+ G +Y FA+ ++ I
Sbjct: 31 KAHELSVLCDAQVAAMIFSQKGRLYEFASSDIRNTI 66
>At4g18960.1 68417.m02793 floral homeotic protein AGAMOUS (AG)
contains an ACG start codon (Riechmann, Ito, and
Meyerowitz, Mol Cell Biol, 1999); supported by cDNA
gi|16155|emb|X53579
Length = 252
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 55
+AYELS L +V L+V S G +Y ++ ++ I
Sbjct: 47 KAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTI 82
>At4g11880.1 68417.m01889 MADS-box protein (AGL14) nearly
identical to MADS-box protein AGL14 GI:862644
Length = 221
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRL 63
+A+ELS L +V L++ S G +Y F++ P KR+
Sbjct: 31 KAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRI 74
>At3g57390.1 68416.m06388 MADS-box protein (AGL18) agamous-like
protein 15 - Arabidopsis thaliana, PIR:S71200
Length = 256
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 18 VGEAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMIT 56
+ +A ELS L +V L++ S TG +Y F++ ++ +++
Sbjct: 29 IKKAKELSILCDAEVALIIFSSTGKIYDFSSVCMEQILS 67
>At3g02310.1 68416.m00213 developmental protein SEPALLATA2 /
floral homeotic protein (AGL4) (SEP2) identical to
developmental protein SEPALLATA2 / floral homeotic
protein AGL4 GB:P29384 [Arabidopsis thaliana], Pfam HMM
hit: SRF-type transcription factors (DNA-binding and
dimerization domain)
Length = 250
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L +V L+V S G +Y F +
Sbjct: 31 KAYELSVLCDAEVSLIVFSNRGKLYEFCS 59
>At2g03710.3 68415.m00329 MADS-box protein (AGL3)
Length = 187
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L ++ LL+ S G +Y F +
Sbjct: 31 KAYELSVLCDAEIALLIFSNRGKLYEFCS 59
>At2g03710.2 68415.m00331 MADS-box protein (AGL3)
Length = 257
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L ++ LL+ S G +Y F +
Sbjct: 31 KAYELSVLCDAEIALLIFSNRGKLYEFCS 59
>At2g03710.1 68415.m00330 MADS-box protein (AGL3)
Length = 258
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L ++ LL+ S G +Y F +
Sbjct: 31 KAYELSVLCDAEIALLIFSNRGKLYEFCS 59
>At5g15800.1 68418.m01848 developmental protein SEPALLATA1 /
floral homeotic protein (AGL2) (SEP1) identical to
developmental protein SEPALLATA1 / floral homeotic
protein (AGL2 / SEP1) SP:P29382 from [Arabidopsis
thaliana]
Length = 251
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L +V L++ S G +Y F +
Sbjct: 31 KAYELSVLCDAEVALIIFSNRGKLYEFCS 59
>At2g22540.1 68415.m02673 short vegetative phase protein (SVP)
identical to cDNA short vegetative phase protein (SVP)
GI:10944319;
Length = 240
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQ 79
+A ELS L V L++ S TG ++ F + ++ ++ + L L D P+ Q
Sbjct: 31 KAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHN---LQSKNLEKLDQPSLELQ 87
Query: 80 RMAATGFEETELTYNVVDEDMKVRQL 105
+ + + ++ + D+ ++RQ+
Sbjct: 88 LVENS--DHARMSKEIADKSHRLRQM 111
>At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 251
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L +V L++ S G +Y F +
Sbjct: 31 KAYELSVLCDAEVALIIFSNRGKLYEFCS 59
>At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly similar
to GB:O22456, MADS-box protein, Location of EST
gb|H37053
Length = 250
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+AYELS L +V L++ S G +Y F +
Sbjct: 31 KAYELSVLCDAEVALIIFSNRGKLYEFCS 59
>At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box
transcription factor DEFH125 - Antirrhinum majus,
PIR:T17029; contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); contains Pfam domain PF01486: K-box region
Length = 240
Score = 28.3 bits (60), Expect = 2.7
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQ 79
+A EL+ L +V +++ S TG +Y F++ ++ +I S + + N P Q
Sbjct: 31 KAKELAILCDAEVGVIIFSSTGRLYDFSSSSMKSVIERYSDAKGETSSENDPASEIQFWQ 90
Query: 80 RMAA 83
+ AA
Sbjct: 91 KEAA 94
>At1g24120.1 68414.m03043 DNAJ heat shock protein, putative similar
to Altered Response to Gravity [Arabidopsis thaliana]
GI:4249662; contains Pfam profile PF00226 DnaJ domain
Length = 436
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 73 PPTTSEQRMAATGFEETELTYNVVDEDMKVRQLAYAG 109
P T+ +AA F+E +YN++ + K RQ AG
Sbjct: 49 PDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAG 85
>At3g61120.1 68416.m06840 MADS-box protein (AGL13)
Length = 244
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFA 47
+AYELS L +V L++ S G +Y F+
Sbjct: 31 KAYELSVLCDAEVSLIIFSTGGKLYEFS 58
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 27.9 bits (59), Expect = 3.6
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 56 TSDSGKRLIQTCLNSPDPP-TTSEQRMAATGFEETELTYNVVDE 98
TS GK+ I+ L D TTS+ MA G EE + + NVV +
Sbjct: 625 TSTKGKKKIKEILQKADAAGTTSDLYMAYKGPEEKKESSNVVHD 668
>At5g10140.1 68418.m01174 MADS-box protein flowering locus F (FLF)
identical to FLOWERING LOCUS C protein (MADS box
protein FLOWERING LOCUS F) (Swiss-Prot:Q9S7Q7)
[Arabidopsis thaliana]
Length = 196
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 18 VGEAYELSTLTGTQVMLLVASETGHVYTFAT 48
+ +A +LS L V LLV S +G +Y+F++
Sbjct: 29 IEKARQLSVLCDASVALLVVSASGKLYSFSS 59
>At5g65070.1 68418.m08185 MADS-box protein (MAF4) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); contains Pfam
profile PF01486: K-box region
Length = 200
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 20 EAYELSTLTGTQVMLLVASETGHVYTFAT 48
+A +LS L + V L++ S TG +Y+F++
Sbjct: 31 KARQLSILCESSVALIIISATGRLYSFSS 59
>At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase family
protein similar to SP|Q9URQ3 tRNA-specific adenosine
deaminase 3 (EC 3.5.4.-) (tRNA-specific adenosine-34
deaminase subunit TAD3) {Saccharomyces cerevisiae};
contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 432
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 2 SLPKPMRIEVYIRISGVGEAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGK 61
S+ K MR+ + + +SG + + V ++ASET VY + + + +
Sbjct: 183 SICKFMRVVIDMAVSGHTPLVNAAVIVDPSVRRIIASETDQVYASSAPRDMTSAETRPFE 242
Query: 62 RLIQTCLN 69
+ CLN
Sbjct: 243 ETGEICLN 250
>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
PF05127: Putative ATPase (DUF699)
Length = 1024
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 78 EQRMAATGFEETELTYNVVDEDMKVRQLAYAGTAQYPIEHHPGLAPSPLQQY 129
E + A +E ELT + V D +R+ A Q E GL S LQQY
Sbjct: 909 EIKSALPRLKERELTAHNVSVDDDIREGAKQVEEQMKKEKIEGLMDSELQQY 960
>At1g70880.1 68414.m08177 Bet v I allergen family protein similar to
Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci
124, 136-139 (1999)] ; contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 159
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 76 TSEQRMAATGFEETELTYNVVDEDMKVRQLAYAGTAQY-PIEHHPG 120
+++QR+ + E+ +TY VV+ D+ ++ T Q P E PG
Sbjct: 73 SAKQRIESLDPEKNRITYRVVEGDLLKEYTSFVTTFQVTPKEGEPG 118
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.131 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,529
Number of Sequences: 28952
Number of extensions: 119457
Number of successful extensions: 350
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 31
length of query: 164
length of database: 12,070,560
effective HSP length: 76
effective length of query: 88
effective length of database: 9,870,208
effective search space: 868578304
effective search space used: 868578304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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